Protein–RNA interactions for Protein: A0A140T8P8

Trbv17, T cell receptor beta, variable 17 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv17A0A140T8P8 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trbv17A0A140T8P8 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
Trbv17A0A140T8P8 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trbv17A0A140T8P8 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC17.66■□□□□ 0.42
Trbv17A0A140T8P8 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trbv17A0A140T8P8 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Trbv17A0A140T8P8 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trbv17A0A140T8P8 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trbv17A0A140T8P8 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC17.65■□□□□ 0.42
Trbv17A0A140T8P8 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trbv17A0A140T8P8 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trbv17A0A140T8P8 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trbv17A0A140T8P8 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trbv17A0A140T8P8 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trbv17A0A140T8P8 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Trbv17A0A140T8P8 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC17.64■□□□□ 0.41
Trbv17A0A140T8P8 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC17.64■□□□□ 0.41
Trbv17A0A140T8P8 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trbv17A0A140T8P8 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trbv17A0A140T8P8 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
Trbv17A0A140T8P8 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trbv17A0A140T8P8 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trbv17A0A140T8P8 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trbv17A0A140T8P8 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trbv17A0A140T8P8 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trbv17A0A140T8P8 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trbv17A0A140T8P8 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Trbv17A0A140T8P8 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC17.61■□□□□ 0.41
Trbv17A0A140T8P8 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC17.61■□□□□ 0.41
Trbv17A0A140T8P8 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trbv17A0A140T8P8 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trbv17A0A140T8P8 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trbv17A0A140T8P8 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC17.61■□□□□ 0.41
Trbv17A0A140T8P8 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trbv17A0A140T8P8 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Trbv17A0A140T8P8 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trbv17A0A140T8P8 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC17.6■□□□□ 0.41
Trbv17A0A140T8P8 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trbv17A0A140T8P8 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trbv17A0A140T8P8 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trbv17A0A140T8P8 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC17.6■□□□□ 0.41
Trbv17A0A140T8P8 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trbv17A0A140T8P8 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trbv17A0A140T8P8 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trbv17A0A140T8P8 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trbv17A0A140T8P8 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trbv17A0A140T8P8 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
Trbv17A0A140T8P8 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trbv17A0A140T8P8 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC17.58■□□□□ 0.4
Trbv17A0A140T8P8 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trbv17A0A140T8P8 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trbv17A0A140T8P8 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trbv17A0A140T8P8 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Trbv17A0A140T8P8 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trbv17A0A140T8P8 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trbv17A0A140T8P8 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trbv17A0A140T8P8 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Trbv17A0A140T8P8 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trbv17A0A140T8P8 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Trbv17A0A140T8P8 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trbv17A0A140T8P8 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trbv17A0A140T8P8 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
Trbv17A0A140T8P8 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trbv17A0A140T8P8 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trbv17A0A140T8P8 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trbv17A0A140T8P8 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
Trbv17A0A140T8P8 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Trbv17A0A140T8P8 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trbv17A0A140T8P8 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trbv17A0A140T8P8 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trbv17A0A140T8P8 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trbv17A0A140T8P8 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Trbv17A0A140T8P8 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Trbv17A0A140T8P8 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trbv17A0A140T8P8 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trbv17A0A140T8P8 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trbv17A0A140T8P8 Gm37847-201ENSMUST00000192163 1497 ntBASIC17.52■□□□□ 0.4
Trbv17A0A140T8P8 Gm31748-201ENSMUST00000194938 1497 ntBASIC17.52■□□□□ 0.4
Trbv17A0A140T8P8 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trbv17A0A140T8P8 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trbv17A0A140T8P8 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Trbv17A0A140T8P8 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Trbv17A0A140T8P8 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
Trbv17A0A140T8P8 Particl-201ENSMUST00000205370 1560 ntBASIC17.51■□□□□ 0.39
Trbv17A0A140T8P8 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trbv17A0A140T8P8 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trbv17A0A140T8P8 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC17.5■□□□□ 0.39
Trbv17A0A140T8P8 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trbv17A0A140T8P8 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Trbv17A0A140T8P8 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
Trbv17A0A140T8P8 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trbv17A0A140T8P8 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trbv17A0A140T8P8 AC153890.1-201ENSMUST00000220021 2469 ntBASIC17.49■□□□□ 0.39
Trbv17A0A140T8P8 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trbv17A0A140T8P8 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trbv17A0A140T8P8 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC17.49■□□□□ 0.39
Trbv17A0A140T8P8 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Trbv17A0A140T8P8 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Trbv17A0A140T8P8 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trbv17A0A140T8P8 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC17.49■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 101.1 ms