Protein–RNA interactions for Protein: A0A0B4J1G9

Trbv5, T cell receptor beta, variable 5 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv5A0A0B4J1G9 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trbv5A0A0B4J1G9 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trbv5A0A0B4J1G9 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trbv5A0A0B4J1G9 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trbv5A0A0B4J1G9 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trbv5A0A0B4J1G9 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trbv5A0A0B4J1G9 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trbv5A0A0B4J1G9 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trbv5A0A0B4J1G9 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trbv5A0A0B4J1G9 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trbv5A0A0B4J1G9 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trbv5A0A0B4J1G9 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv5A0A0B4J1G9 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv5A0A0B4J1G9 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv5A0A0B4J1G9 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv5A0A0B4J1G9 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Trbv5A0A0B4J1G9 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv5A0A0B4J1G9 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv5A0A0B4J1G9 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv5A0A0B4J1G9 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC18.66■□□□□ 0.58
Trbv5A0A0B4J1G9 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv5A0A0B4J1G9 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC18.65■□□□□ 0.58
Trbv5A0A0B4J1G9 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trbv5A0A0B4J1G9 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trbv5A0A0B4J1G9 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trbv5A0A0B4J1G9 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Trbv5A0A0B4J1G9 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Trbv5A0A0B4J1G9 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Trbv5A0A0B4J1G9 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.58
Trbv5A0A0B4J1G9 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC18.64■□□□□ 0.58
Trbv5A0A0B4J1G9 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Trbv5A0A0B4J1G9 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv5A0A0B4J1G9 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv5A0A0B4J1G9 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Trbv5A0A0B4J1G9 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trbv5A0A0B4J1G9 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trbv5A0A0B4J1G9 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Trbv5A0A0B4J1G9 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trbv5A0A0B4J1G9 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trbv5A0A0B4J1G9 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trbv5A0A0B4J1G9 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trbv5A0A0B4J1G9 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv5A0A0B4J1G9 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv5A0A0B4J1G9 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
Trbv5A0A0B4J1G9 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv5A0A0B4J1G9 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv5A0A0B4J1G9 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv5A0A0B4J1G9 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv5A0A0B4J1G9 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC18.6■□□□□ 0.57
Trbv5A0A0B4J1G9 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Trbv5A0A0B4J1G9 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv5A0A0B4J1G9 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trbv5A0A0B4J1G9 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trbv5A0A0B4J1G9 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
Trbv5A0A0B4J1G9 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trbv5A0A0B4J1G9 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC18.58■□□□□ 0.57
Trbv5A0A0B4J1G9 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC18.58■□□□□ 0.57
Trbv5A0A0B4J1G9 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Trbv5A0A0B4J1G9 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Trbv5A0A0B4J1G9 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trbv5A0A0B4J1G9 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trbv5A0A0B4J1G9 Gm26115-201ENSMUST00000175605 87 ntBASIC18.57■□□□□ 0.56
Trbv5A0A0B4J1G9 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Trbv5A0A0B4J1G9 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trbv5A0A0B4J1G9 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trbv5A0A0B4J1G9 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trbv5A0A0B4J1G9 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trbv5A0A0B4J1G9 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC18.56■□□□□ 0.56
Trbv5A0A0B4J1G9 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trbv5A0A0B4J1G9 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trbv5A0A0B4J1G9 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC18.55■□□□□ 0.56
Trbv5A0A0B4J1G9 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Trbv5A0A0B4J1G9 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trbv5A0A0B4J1G9 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trbv5A0A0B4J1G9 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trbv5A0A0B4J1G9 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trbv5A0A0B4J1G9 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trbv5A0A0B4J1G9 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trbv5A0A0B4J1G9 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trbv5A0A0B4J1G9 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trbv5A0A0B4J1G9 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv5A0A0B4J1G9 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv5A0A0B4J1G9 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Trbv5A0A0B4J1G9 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv5A0A0B4J1G9 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv5A0A0B4J1G9 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trbv5A0A0B4J1G9 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trbv5A0A0B4J1G9 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Trbv5A0A0B4J1G9 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trbv5A0A0B4J1G9 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trbv5A0A0B4J1G9 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Trbv5A0A0B4J1G9 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv5A0A0B4J1G9 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv5A0A0B4J1G9 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Trbv5A0A0B4J1G9 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv5A0A0B4J1G9 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC18.5■□□□□ 0.55
Trbv5A0A0B4J1G9 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv5A0A0B4J1G9 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Trbv5A0A0B4J1G9 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv5A0A0B4J1G9 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 65.3 ms