Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC023813.4-201ENST00000607580 580 ntBASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 AC069234.5-201ENST00000611056 416 ntBASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 AC009452.1-201ENST00000640823 606 ntBASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 MTND5P27-201ENST00000428871 1720 ntBASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 AC027514.1-201ENST00000588561 1603 ntBASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 RNU6-1251P-201ENST00000364502 107 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 SNORD65-201ENST00000391079 73 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 SNORA26.9-201ENST00000391322 122 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 FGF7P8-201ENST00000402994 292 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 RNU2-2P-201ENST00000410396 191 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 CYCSP49-201ENST00000420810 319 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 MTCO3P21-201ENST00000430791 643 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 AC009969.1-201ENST00000438726 172 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 AC069277.2-201ENST00000454211 432 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 MTCO3P11-201ENST00000455103 774 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 AC005840.1-201ENST00000498412 377 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 AC092436.3-201ENST00000511788 257 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 AC026464.5-201ENST00000562497 722 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 AC099778.2-201ENST00000610904 211 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 U2.15-201ENST00000611544 191 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 U2.16-201ENST00000613119 191 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 U2.12-201ENST00000613778 191 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 U2.20-201ENST00000613956 192 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 U2.9-201ENST00000615427 191 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 U2.11-201ENST00000616345 191 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 U2.2-201ENST00000616535 191 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 U2.3-201ENST00000617785 191 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 U2.19-201ENST00000618602 191 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 RNU2-1-201ENST00000618664 191 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 U2.6-201ENST00000619225 191 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 U2.5-201ENST00000619465 191 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 U2.10-201ENST00000620268 191 ntBASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
SHANK3Q9BYB0 NDUFB4P5-201ENST00000415445 361 ntBASIC2.96□□□□□ -1.93
SHANK3Q9BYB0 PTP4A1P7-201ENST00000423476 514 ntBASIC2.96□□□□□ -1.93
SHANK3Q9BYB0 AL392003.1-201ENST00000434394 243 ntBASIC2.96□□□□□ -1.93
SHANK3Q9BYB0 MTND2P2-201ENST00000434633 945 ntBASIC2.96□□□□□ -1.93
SHANK3Q9BYB0 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.96□□□□□ -1.93
SHANK3Q9BYB0 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC2.96□□□□□ -1.93
SHANK3Q9BYB0 RPL36AP33-201ENST00000450395 310 ntBASIC2.96□□□□□ -1.93
SHANK3Q9BYB0 AC087385.1-201ENST00000475062 312 ntBASIC2.96□□□□□ -1.93
SHANK3Q9BYB0 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.96□□□□□ -1.93
SHANK3Q9BYB0 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC2.96□□□□□ -1.93
SHANK3Q9BYB0 AC068339.2-201ENST00000534395 618 ntBASIC2.96□□□□□ -1.93
SHANK3Q9BYB0 AC126177.3-201ENST00000551839 688 ntBASIC2.96□□□□□ -1.93
SHANK3Q9BYB0 AC084373.1-201ENST00000603311 235 ntBASIC2.96□□□□□ -1.93
SHANK3Q9BYB0 AC107905.1-201ENST00000616204 426 ntBASIC2.96□□□□□ -1.93
SHANK3Q9BYB0 AC090897.3-201ENST00000636973 1157 ntBASIC2.96□□□□□ -1.93
SHANK3Q9BYB0 U6.98-201ENST00000637157 84 ntBASIC2.96□□□□□ -1.93
SHANK3Q9BYB0 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
SHANK3Q9BYB0 AC010329.2-201ENST00000595195 2737 ntBASIC2.96□□□□□ -1.94
SHANK3Q9BYB0 MIR378A-201ENST00000362177 66 ntBASIC2.96□□□□□ -1.94
SHANK3Q9BYB0 RNU1-91P-201ENST00000364746 163 ntBASIC2.96□□□□□ -1.94
SHANK3Q9BYB0 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
SHANK3Q9BYB0 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC2.96□□□□□ -1.94
SHANK3Q9BYB0 AC093151.1-201ENST00000427711 313 ntBASIC2.96□□□□□ -1.94
SHANK3Q9BYB0 MTCYBP29-201ENST00000436327 1006 ntBASIC2.96□□□□□ -1.94
SHANK3Q9BYB0 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC2.96□□□□□ -1.94
SHANK3Q9BYB0 NFU1-207ENST00000462320 558 ntTSL 4 BASIC2.96□□□□□ -1.94
SHANK3Q9BYB0 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC2.96□□□□□ -1.94
SHANK3Q9BYB0 XKRY-201ENST00000510392 1100 ntBASIC2.96□□□□□ -1.94
SHANK3Q9BYB0 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC2.96□□□□□ -1.94
SHANK3Q9BYB0 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC2.96□□□□□ -1.94
SHANK3Q9BYB0 AC092159.4-201ENST00000624944 550 ntBASIC2.96□□□□□ -1.94
SHANK3Q9BYB0 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC2.96□□□□□ -1.94
SHANK3Q9BYB0 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC2.95□□□□□ -1.94
SHANK3Q9BYB0 FRG1BP-201ENST00000278882 761 ntBASIC2.95□□□□□ -1.94
SHANK3Q9BYB0 CR769767.1-201ENST00000436337 346 ntBASIC2.95□□□□□ -1.94
SHANK3Q9BYB0 CACYBPP1-201ENST00000438592 684 ntBASIC2.95□□□□□ -1.94
SHANK3Q9BYB0 RPL31P20-201ENST00000449593 360 ntBASIC2.95□□□□□ -1.94
SHANK3Q9BYB0 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC2.95□□□□□ -1.94
SHANK3Q9BYB0 LARP7P4-201ENST00000481075 878 ntBASIC2.95□□□□□ -1.94
SHANK3Q9BYB0 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC2.95□□□□□ -1.94
SHANK3Q9BYB0 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC2.95□□□□□ -1.94
SHANK3Q9BYB0 AK6P1-201ENST00000540219 478 ntBASIC2.95□□□□□ -1.94
SHANK3Q9BYB0 AC138473.1-201ENST00000605717 526 ntBASIC2.95□□□□□ -1.94
SHANK3Q9BYB0 AC145207.9-201ENST00000623802 325 ntBASIC2.95□□□□□ -1.94
SHANK3Q9BYB0 MIR6733-201ENST00000635723 61 ntBASIC2.95□□□□□ -1.94
SHANK3Q9BYB0 PHKBP1-201ENST00000450951 1951 ntBASIC2.95□□□□□ -1.94
SHANK3Q9BYB0 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
SHANK3Q9BYB0 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
SHANK3Q9BYB0 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.95□□□□□ -1.94
SHANK3Q9BYB0 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
SHANK3Q9BYB0 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
SHANK3Q9BYB0 Y_RNA.112-201ENST00000363250 102 ntBASIC2.94□□□□□ -1.94
SHANK3Q9BYB0 RNU6-819P-201ENST00000364116 107 ntBASIC2.94□□□□□ -1.94
SHANK3Q9BYB0 USP9YP6-201ENST00000413550 854 ntBASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 212.7 ms