Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 HMGB3P26-201ENST00000560051 582 ntBASIC3.5□□□□□ -1.85
SHANK3Q9BYB0 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
SHANK3Q9BYB0 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.5□□□□□ -1.85
SHANK3Q9BYB0 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.5□□□□□ -1.85
SHANK3Q9BYB0 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.5□□□□□ -1.85
SHANK3Q9BYB0 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.5□□□□□ -1.85
SHANK3Q9BYB0 MIR26A1-201ENST00000362205 77 ntBASIC3.5□□□□□ -1.85
SHANK3Q9BYB0 SNRPGP5-201ENST00000456003 220 ntBASIC3.5□□□□□ -1.85
SHANK3Q9BYB0 RPL21P41-201ENST00000459863 264 ntBASIC3.5□□□□□ -1.85
SHANK3Q9BYB0 PRELID3BP7-201ENST00000503606 469 ntBASIC3.5□□□□□ -1.85
SHANK3Q9BYB0 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.5□□□□□ -1.85
SHANK3Q9BYB0 AC096586.2-201ENST00000610260 441 ntBASIC3.5□□□□□ -1.85
SHANK3Q9BYB0 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
SHANK3Q9BYB0 AL589935.2-201ENST00000616471 1231 ntBASIC3.5□□□□□ -1.85
SHANK3Q9BYB0 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.5□□□□□ -1.85
SHANK3Q9BYB0 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
SHANK3Q9BYB0 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.49□□□□□ -1.85
SHANK3Q9BYB0 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
SHANK3Q9BYB0 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
SHANK3Q9BYB0 AC004972.1-201ENST00000623934 2209 ntBASIC3.49□□□□□ -1.85
SHANK3Q9BYB0 AC004925.1-201ENST00000624256 2706 ntBASIC3.49□□□□□ -1.85
SHANK3Q9BYB0 RPL31P1-201ENST00000398116 372 ntBASIC3.49□□□□□ -1.85
SHANK3Q9BYB0 AL583834.1-201ENST00000406943 343 ntBASIC3.49□□□□□ -1.85
SHANK3Q9BYB0 Y_RNA.595-201ENST00000410403 105 ntBASIC3.49□□□□□ -1.85
SHANK3Q9BYB0 AL137014.1-201ENST00000420490 1226 ntBASIC3.49□□□□□ -1.85
SHANK3Q9BYB0 CYCSP20-201ENST00000473154 315 ntBASIC3.49□□□□□ -1.85
SHANK3Q9BYB0 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
SHANK3Q9BYB0 MTHFD2P4-201ENST00000515074 1025 ntBASIC3.49□□□□□ -1.85
SHANK3Q9BYB0 RN7SKP219-201ENST00000516825 296 ntBASIC3.49□□□□□ -1.85
SHANK3Q9BYB0 RNU6-1231P-201ENST00000517185 103 ntBASIC3.49□□□□□ -1.85
SHANK3Q9BYB0 AP000867.2-201ENST00000532468 320 ntBASIC3.49□□□□□ -1.85
SHANK3Q9BYB0 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC3.49□□□□□ -1.85
SHANK3Q9BYB0 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.49□□□□□ -1.85
SHANK3Q9BYB0 AC123768.4-201ENST00000616244 701 ntBASIC3.49□□□□□ -1.85
SHANK3Q9BYB0 AC092628.2-201ENST00000622492 339 ntBASIC3.49□□□□□ -1.85
SHANK3Q9BYB0 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
SHANK3Q9BYB0 AC092593.1-201ENST00000515413 1815 ntBASIC3.49□□□□□ -1.85
SHANK3Q9BYB0 NSRP1P1-201ENST00000444067 1693 ntBASIC3.48□□□□□ -1.85
SHANK3Q9BYB0 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.48□□□□□ -1.85
SHANK3Q9BYB0 Y_RNA.355-201ENST00000365462 98 ntBASIC3.48□□□□□ -1.85
SHANK3Q9BYB0 AC245291.1-201ENST00000419501 328 ntBASIC3.48□□□□□ -1.85
SHANK3Q9BYB0 AC091179.1-201ENST00000461606 579 ntBASIC3.48□□□□□ -1.85
SHANK3Q9BYB0 AC092436.1-201ENST00000506450 503 ntBASIC3.48□□□□□ -1.85
SHANK3Q9BYB0 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.48□□□□□ -1.85
SHANK3Q9BYB0 UBTFL10-201ENST00000528532 562 ntBASIC3.48□□□□□ -1.85
SHANK3Q9BYB0 AP000919.1-202ENST00000581139 1264 ntBASIC3.48□□□□□ -1.85
SHANK3Q9BYB0 AL353997.5-201ENST00000618886 171 ntBASIC3.48□□□□□ -1.85
SHANK3Q9BYB0 AC009039.2-201ENST00000624524 529 ntBASIC3.48□□□□□ -1.85
SHANK3Q9BYB0 AC026634.1-201ENST00000634369 198 ntBASIC3.48□□□□□ -1.85
SHANK3Q9BYB0 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
SHANK3Q9BYB0 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.47□□□□□ -1.85
SHANK3Q9BYB0 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.47□□□□□ -1.85
SHANK3Q9BYB0 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.47□□□□□ -1.85
SHANK3Q9BYB0 OR5H5P-201ENST00000503164 928 ntBASIC3.47□□□□□ -1.85
SHANK3Q9BYB0 AC005921.1-201ENST00000510589 286 ntBASIC3.47□□□□□ -1.85
SHANK3Q9BYB0 AC107918.3-201ENST00000533272 382 ntBASIC3.47□□□□□ -1.85
SHANK3Q9BYB0 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC3.47□□□□□ -1.85
SHANK3Q9BYB0 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.47□□□□□ -1.85
SHANK3Q9BYB0 AC025034.2-201ENST00000623264 286 ntBASIC3.47□□□□□ -1.85
SHANK3Q9BYB0 CTSLP2-204ENST00000629029 392 ntBASIC3.47□□□□□ -1.85
SHANK3Q9BYB0 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.47□□□□□ -1.85
SHANK3Q9BYB0 AC093831.2-201ENST00000624393 3427 ntBASIC3.47□□□□□ -1.85
SHANK3Q9BYB0 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC3.47□□□□□ -1.85
SHANK3Q9BYB0 SNORD62.1-201ENST00000362541 86 ntBASIC3.47□□□□□ -1.85
SHANK3Q9BYB0 AC107081.1-201ENST00000414975 361 ntBASIC3.47□□□□□ -1.85
SHANK3Q9BYB0 FCF1P1-201ENST00000432690 571 ntBASIC3.47□□□□□ -1.85
SHANK3Q9BYB0 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
SHANK3Q9BYB0 RN7SL75P-201ENST00000461926 281 ntBASIC3.47□□□□□ -1.85
SHANK3Q9BYB0 RN7SKP60-201ENST00000516985 239 ntBASIC3.47□□□□□ -1.85
SHANK3Q9BYB0 FAM60DP-201ENST00000524174 632 ntBASIC3.47□□□□□ -1.85
SHANK3Q9BYB0 AC078814.3-201ENST00000553036 491 ntBASIC3.47□□□□□ -1.85
SHANK3Q9BYB0 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.47□□□□□ -1.85
SHANK3Q9BYB0 AP000942.3-201ENST00000603702 160 ntBASIC3.47□□□□□ -1.85
SHANK3Q9BYB0 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
SHANK3Q9BYB0 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
SHANK3Q9BYB0 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC3.46□□□□□ -1.86
SHANK3Q9BYB0 RNU6-167P-201ENST00000384292 106 ntBASIC3.46□□□□□ -1.86
SHANK3Q9BYB0 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
SHANK3Q9BYB0 MTND4LP21-201ENST00000415303 295 ntBASIC3.46□□□□□ -1.86
SHANK3Q9BYB0 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.46□□□□□ -1.86
SHANK3Q9BYB0 AL138787.1-202ENST00000437804 898 ntBASIC3.46□□□□□ -1.86
SHANK3Q9BYB0 FAM103A2P-201ENST00000444122 354 ntBASIC3.46□□□□□ -1.86
SHANK3Q9BYB0 EXTL2P1-201ENST00000446218 416 ntBASIC3.46□□□□□ -1.86
SHANK3Q9BYB0 MTCYBP19-201ENST00000517463 1124 ntBASIC3.46□□□□□ -1.86
SHANK3Q9BYB0 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.46□□□□□ -1.86
SHANK3Q9BYB0 MIR4635-201ENST00000583759 79 ntBASIC3.46□□□□□ -1.86
SHANK3Q9BYB0 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC3.46□□□□□ -1.86
SHANK3Q9BYB0 AC008121.2-201ENST00000614647 523 ntBASIC3.46□□□□□ -1.86
SHANK3Q9BYB0 AC079228.1-201ENST00000624774 1049 ntBASIC3.46□□□□□ -1.86
SHANK3Q9BYB0 OR11H5P-202ENST00000641612 1325 ntBASIC3.46□□□□□ -1.86
SHANK3Q9BYB0 AC095050.2-201ENST00000510748 1458 ntBASIC3.46□□□□□ -1.86
SHANK3Q9BYB0 CR382285.2-201ENST00000624662 1495 ntBASIC3.46□□□□□ -1.86
SHANK3Q9BYB0 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
SHANK3Q9BYB0 AC016717.2-201ENST00000609089 5141 ntBASIC3.46□□□□□ -1.86
SHANK3Q9BYB0 MTND5P23-201ENST00000430812 1655 ntBASIC3.45□□□□□ -1.86
SHANK3Q9BYB0 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.45□□□□□ -1.86
SHANK3Q9BYB0 SNORD114-1-201ENST00000362705 72 ntBASIC3.45□□□□□ -1.86
SHANK3Q9BYB0 RNA5SP383-201ENST00000362934 120 ntBASIC3.45□□□□□ -1.86
SHANK3Q9BYB0 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.45□□□□□ -1.86
SHANK3Q9BYB0 AL592045.1-201ENST00000429867 352 ntBASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 201.3 ms