Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col6a6Q8C6K9 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC21.73■■□□□ 1.07
Col6a6Q8C6K9 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
Col6a6Q8C6K9 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col6a6Q8C6K9 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col6a6Q8C6K9 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC21.71■■□□□ 1.07
Col6a6Q8C6K9 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col6a6Q8C6K9 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Col6a6Q8C6K9 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col6a6Q8C6K9 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col6a6Q8C6K9 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col6a6Q8C6K9 AC154454.1-201ENSMUST00000225253 216 ntBASIC21.68■■□□□ 1.06
Col6a6Q8C6K9 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC21.68■■□□□ 1.06
Col6a6Q8C6K9 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Col6a6Q8C6K9 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC21.67■■□□□ 1.06
Col6a6Q8C6K9 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col6a6Q8C6K9 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
Col6a6Q8C6K9 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col6a6Q8C6K9 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col6a6Q8C6K9 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col6a6Q8C6K9 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col6a6Q8C6K9 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col6a6Q8C6K9 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC21.64■■□□□ 1.06
Col6a6Q8C6K9 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
Col6a6Q8C6K9 Gm5812-201ENSMUST00000061073 957 ntBASIC21.64■■□□□ 1.06
Col6a6Q8C6K9 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col6a6Q8C6K9 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC21.64■■□□□ 1.05
Col6a6Q8C6K9 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Col6a6Q8C6K9 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col6a6Q8C6K9 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
Col6a6Q8C6K9 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col6a6Q8C6K9 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Col6a6Q8C6K9 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col6a6Q8C6K9 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col6a6Q8C6K9 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC21.62■■□□□ 1.05
Col6a6Q8C6K9 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col6a6Q8C6K9 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col6a6Q8C6K9 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col6a6Q8C6K9 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col6a6Q8C6K9 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC21.6■■□□□ 1.05
Col6a6Q8C6K9 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Col6a6Q8C6K9 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Col6a6Q8C6K9 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Col6a6Q8C6K9 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col6a6Q8C6K9 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC21.57■■□□□ 1.04
Col6a6Q8C6K9 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC21.57■■□□□ 1.04
Col6a6Q8C6K9 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col6a6Q8C6K9 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Col6a6Q8C6K9 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC21.55■■□□□ 1.04
Col6a6Q8C6K9 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC21.55■■□□□ 1.04
Col6a6Q8C6K9 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Col6a6Q8C6K9 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Col6a6Q8C6K9 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Col6a6Q8C6K9 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Col6a6Q8C6K9 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
Col6a6Q8C6K9 Mir3960-201ENSMUST00000198213 73 ntBASIC21.53■■□□□ 1.04
Col6a6Q8C6K9 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Col6a6Q8C6K9 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Col6a6Q8C6K9 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Col6a6Q8C6K9 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
Col6a6Q8C6K9 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC21.52■■□□□ 1.04
Col6a6Q8C6K9 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Col6a6Q8C6K9 Gm14523-201ENSMUST00000117260 558 ntBASIC21.52■■□□□ 1.03
Col6a6Q8C6K9 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
Col6a6Q8C6K9 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
Col6a6Q8C6K9 Gm12818-201ENSMUST00000117562 1349 ntBASIC21.5■■□□□ 1.03
Col6a6Q8C6K9 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col6a6Q8C6K9 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Col6a6Q8C6K9 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col6a6Q8C6K9 Gm27502-201ENSMUST00000183495 199 ntBASIC21.49■■□□□ 1.03
Col6a6Q8C6K9 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Col6a6Q8C6K9 Gm10420-201ENSMUST00000121713 882 ntBASIC21.48■■□□□ 1.03
Col6a6Q8C6K9 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC21.48■■□□□ 1.03
Col6a6Q8C6K9 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col6a6Q8C6K9 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC21.47■■□□□ 1.03
Col6a6Q8C6K9 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col6a6Q8C6K9 Gm15039-201ENSMUST00000118914 875 ntBASIC21.47■■□□□ 1.03
Col6a6Q8C6K9 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Col6a6Q8C6K9 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col6a6Q8C6K9 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC21.46■■□□□ 1.03
Col6a6Q8C6K9 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC21.46■■□□□ 1.03
Col6a6Q8C6K9 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Col6a6Q8C6K9 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col6a6Q8C6K9 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
Col6a6Q8C6K9 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Col6a6Q8C6K9 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col6a6Q8C6K9 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Col6a6Q8C6K9 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Col6a6Q8C6K9 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Col6a6Q8C6K9 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Col6a6Q8C6K9 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Col6a6Q8C6K9 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col6a6Q8C6K9 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC21.43■■□□□ 1.02
Col6a6Q8C6K9 Gm5067-201ENSMUST00000170449 1009 ntBASIC21.43■■□□□ 1.02
Col6a6Q8C6K9 Gm37136-201ENSMUST00000194368 194 ntBASIC21.43■■□□□ 1.02
Col6a6Q8C6K9 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col6a6Q8C6K9 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Col6a6Q8C6K9 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Col6a6Q8C6K9 Gm9905-201ENSMUST00000065740 1845 ntBASIC21.41■■□□□ 1.02
Col6a6Q8C6K9 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC21.41■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 16.1 ms