Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trav5d-4Q5R1F6 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trav5d-4Q5R1F6 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC20.2■□□□□ 0.82
Trav5d-4Q5R1F6 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Trav5d-4Q5R1F6 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC20.19■□□□□ 0.82
Trav5d-4Q5R1F6 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Trav5d-4Q5R1F6 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Trav5d-4Q5R1F6 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC20.18■□□□□ 0.82
Trav5d-4Q5R1F6 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav5d-4Q5R1F6 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trav5d-4Q5R1F6 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Trav5d-4Q5R1F6 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trav5d-4Q5R1F6 AC122428.3-201ENSMUST00000215551 2290 ntBASIC20.16■□□□□ 0.82
Trav5d-4Q5R1F6 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trav5d-4Q5R1F6 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Trav5d-4Q5R1F6 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trav5d-4Q5R1F6 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC20.16■□□□□ 0.82
Trav5d-4Q5R1F6 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC20.15■□□□□ 0.82
Trav5d-4Q5R1F6 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav5d-4Q5R1F6 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav5d-4Q5R1F6 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC20.15■□□□□ 0.82
Trav5d-4Q5R1F6 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav5d-4Q5R1F6 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC20.15■□□□□ 0.82
Trav5d-4Q5R1F6 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav5d-4Q5R1F6 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Trav5d-4Q5R1F6 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav5d-4Q5R1F6 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trav5d-4Q5R1F6 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Trav5d-4Q5R1F6 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav5d-4Q5R1F6 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trav5d-4Q5R1F6 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trav5d-4Q5R1F6 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Trav5d-4Q5R1F6 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trav5d-4Q5R1F6 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trav5d-4Q5R1F6 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trav5d-4Q5R1F6 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trav5d-4Q5R1F6 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Trav5d-4Q5R1F6 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Trav5d-4Q5R1F6 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trav5d-4Q5R1F6 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Trav5d-4Q5R1F6 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC20.1■□□□□ 0.81
Trav5d-4Q5R1F6 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Trav5d-4Q5R1F6 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
Trav5d-4Q5R1F6 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC20.09■□□□□ 0.81
Trav5d-4Q5R1F6 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trav5d-4Q5R1F6 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trav5d-4Q5R1F6 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trav5d-4Q5R1F6 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
Trav5d-4Q5R1F6 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Trav5d-4Q5R1F6 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
Trav5d-4Q5R1F6 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Trav5d-4Q5R1F6 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC20.07■□□□□ 0.8
Trav5d-4Q5R1F6 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trav5d-4Q5R1F6 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trav5d-4Q5R1F6 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Trav5d-4Q5R1F6 Nkain2-201ENSMUST00000092602 558 ntBASIC20.06■□□□□ 0.8
Trav5d-4Q5R1F6 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trav5d-4Q5R1F6 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trav5d-4Q5R1F6 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC20.05■□□□□ 0.8
Trav5d-4Q5R1F6 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trav5d-4Q5R1F6 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trav5d-4Q5R1F6 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trav5d-4Q5R1F6 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trav5d-4Q5R1F6 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Trav5d-4Q5R1F6 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC20.03■□□□□ 0.8
Trav5d-4Q5R1F6 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trav5d-4Q5R1F6 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC20.03■□□□□ 0.8
Trav5d-4Q5R1F6 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
Trav5d-4Q5R1F6 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trav5d-4Q5R1F6 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Trav5d-4Q5R1F6 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
Trav5d-4Q5R1F6 Gm42809-201ENSMUST00000198429 1138 ntBASIC20.02■□□□□ 0.8
Trav5d-4Q5R1F6 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Trav5d-4Q5R1F6 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC20.01■□□□□ 0.79
Trav5d-4Q5R1F6 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trav5d-4Q5R1F6 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trav5d-4Q5R1F6 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Trav5d-4Q5R1F6 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC20■□□□□ 0.79
Trav5d-4Q5R1F6 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Trav5d-4Q5R1F6 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trav5d-4Q5R1F6 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trav5d-4Q5R1F6 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC20■□□□□ 0.79
Trav5d-4Q5R1F6 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC20■□□□□ 0.79
Trav5d-4Q5R1F6 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC20■□□□□ 0.79
Trav5d-4Q5R1F6 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC19.99■□□□□ 0.79
Trav5d-4Q5R1F6 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC19.99■□□□□ 0.79
Trav5d-4Q5R1F6 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trav5d-4Q5R1F6 Gm37847-201ENSMUST00000192163 1497 ntBASIC19.99■□□□□ 0.79
Trav5d-4Q5R1F6 Gm31748-201ENSMUST00000194938 1497 ntBASIC19.99■□□□□ 0.79
Trav5d-4Q5R1F6 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trav5d-4Q5R1F6 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trav5d-4Q5R1F6 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trav5d-4Q5R1F6 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trav5d-4Q5R1F6 Gm9939-201ENSMUST00000067161 1154 ntBASIC19.97■□□□□ 0.79
Trav5d-4Q5R1F6 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC19.96■□□□□ 0.79
Trav5d-4Q5R1F6 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Trav5d-4Q5R1F6 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trav5d-4Q5R1F6 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trav5d-4Q5R1F6 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trav5d-4Q5R1F6 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms