Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Cops4O88544 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Cops4O88544 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Cops4O88544 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Cops4O88544 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
Cops4O88544 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Cops4O88544 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Cops4O88544 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC21.56■■□□□ 1.04
Cops4O88544 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Cops4O88544 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cops4O88544 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC21.55■■□□□ 1.04
Cops4O88544 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cops4O88544 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
Cops4O88544 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Cops4O88544 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cops4O88544 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Cops4O88544 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cops4O88544 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cops4O88544 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cops4O88544 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
Cops4O88544 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Cops4O88544 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Cops4O88544 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Cops4O88544 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Cops4O88544 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Cops4O88544 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Cops4O88544 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Cops4O88544 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Cops4O88544 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Cops4O88544 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Cops4O88544 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Cops4O88544 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Cops4O88544 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Cops4O88544 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Cops4O88544 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Cops4O88544 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Cops4O88544 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Cops4O88544 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Cops4O88544 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
Cops4O88544 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
Cops4O88544 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC21.49■■□□□ 1.03
Cops4O88544 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC21.48■■□□□ 1.03
Cops4O88544 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Cops4O88544 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC21.48■■□□□ 1.03
Cops4O88544 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Cops4O88544 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cops4O88544 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Cops4O88544 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cops4O88544 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
Cops4O88544 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC21.46■■□□□ 1.03
Cops4O88544 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Cops4O88544 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC21.46■■□□□ 1.03
Cops4O88544 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
Cops4O88544 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cops4O88544 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC21.45■■□□□ 1.02
Cops4O88544 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Cops4O88544 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
Cops4O88544 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Cops4O88544 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC21.44■■□□□ 1.02
Cops4O88544 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Cops4O88544 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Cops4O88544 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Cops4O88544 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Cops4O88544 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
Cops4O88544 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Cops4O88544 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC21.42■■□□□ 1.02
Cops4O88544 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Cops4O88544 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Cops4O88544 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Cops4O88544 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC21.41■■□□□ 1.02
Cops4O88544 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
Cops4O88544 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Cops4O88544 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Cops4O88544 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Cops4O88544 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Cops4O88544 Gm17641-201ENSMUST00000166328 2350 ntBASIC21.4■■□□□ 1.02
Cops4O88544 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC21.39■■□□□ 1.02
Cops4O88544 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Cops4O88544 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
Cops4O88544 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Cops4O88544 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Cops4O88544 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
Cops4O88544 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
Cops4O88544 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC21.38■■□□□ 1.01
Cops4O88544 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cops4O88544 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
Cops4O88544 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Cops4O88544 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Cops4O88544 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cops4O88544 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cops4O88544 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Cops4O88544 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cops4O88544 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cops4O88544 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cops4O88544 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC21.35■■□□□ 1.01
Cops4O88544 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cops4O88544 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC21.35■■□□□ 1.01
Cops4O88544 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Cops4O88544 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Cops4O88544 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 11.5 ms