Protein–RNA interactions for Protein: Q3TL54

Trim43a, Tripartite motif-containing protein 43A, mousemouse

Predictions only

Length 445 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim43aQ3TL54 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim43aQ3TL54 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Trim43aQ3TL54 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim43aQ3TL54 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim43aQ3TL54 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim43aQ3TL54 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim43aQ3TL54 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC18.2■□□□□ 0.5
Trim43aQ3TL54 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim43aQ3TL54 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim43aQ3TL54 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trim43aQ3TL54 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC18.19■□□□□ 0.5
Trim43aQ3TL54 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC18.19■□□□□ 0.5
Trim43aQ3TL54 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim43aQ3TL54 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Trim43aQ3TL54 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Trim43aQ3TL54 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim43aQ3TL54 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim43aQ3TL54 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trim43aQ3TL54 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim43aQ3TL54 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Trim43aQ3TL54 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Trim43aQ3TL54 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC18.18■□□□□ 0.5
Trim43aQ3TL54 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim43aQ3TL54 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim43aQ3TL54 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim43aQ3TL54 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim43aQ3TL54 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Trim43aQ3TL54 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim43aQ3TL54 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC18.18■□□□□ 0.5
Trim43aQ3TL54 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim43aQ3TL54 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Trim43aQ3TL54 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
Trim43aQ3TL54 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC18.18■□□□□ 0.5
Trim43aQ3TL54 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Gm13148-201ENSMUST00000118892 745 ntBASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Gm12669-201ENSMUST00000122162 1009 ntBASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
Trim43aQ3TL54 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Gm29241-201ENSMUST00000189260 1096 ntBASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim43aQ3TL54 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Trim43aQ3TL54 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim43aQ3TL54 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim43aQ3TL54 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim43aQ3TL54 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim43aQ3TL54 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim43aQ3TL54 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim43aQ3TL54 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC18.16■□□□□ 0.5
Trim43aQ3TL54 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC18.16■□□□□ 0.5
Trim43aQ3TL54 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
Trim43aQ3TL54 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC18.16■□□□□ 0.5
Trim43aQ3TL54 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim43aQ3TL54 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim43aQ3TL54 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim43aQ3TL54 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim43aQ3TL54 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim43aQ3TL54 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim43aQ3TL54 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim43aQ3TL54 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Trim43aQ3TL54 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Trim43aQ3TL54 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim43aQ3TL54 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim43aQ3TL54 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim43aQ3TL54 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim43aQ3TL54 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC18.15■□□□□ 0.5
Trim43aQ3TL54 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC18.15■□□□□ 0.5
Trim43aQ3TL54 Gm5408-201ENSMUST00000197998 747 ntBASIC18.15■□□□□ 0.5
Trim43aQ3TL54 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Trim43aQ3TL54 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim43aQ3TL54 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Trim43aQ3TL54 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim43aQ3TL54 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim43aQ3TL54 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC18.15■□□□□ 0.5
Trim43aQ3TL54 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim43aQ3TL54 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim43aQ3TL54 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
Trim43aQ3TL54 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim43aQ3TL54 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim43aQ3TL54 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim43aQ3TL54 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Trim43aQ3TL54 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms