Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Hmgb4Q6P8W9 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
Hmgb4Q6P8W9 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC24.98■■□□□ 1.59
Hmgb4Q6P8W9 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Hmgb4Q6P8W9 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Hmgb4Q6P8W9 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
Hmgb4Q6P8W9 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC24.97■■□□□ 1.59
Hmgb4Q6P8W9 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
Hmgb4Q6P8W9 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Hmgb4Q6P8W9 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC24.96■■□□□ 1.59
Hmgb4Q6P8W9 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC24.96■■□□□ 1.59
Hmgb4Q6P8W9 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC24.96■■□□□ 1.59
Hmgb4Q6P8W9 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC24.95■■□□□ 1.59
Hmgb4Q6P8W9 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
Hmgb4Q6P8W9 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC24.95■■□□□ 1.58
Hmgb4Q6P8W9 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Hmgb4Q6P8W9 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC24.94■■□□□ 1.58
Hmgb4Q6P8W9 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Hmgb4Q6P8W9 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Hmgb4Q6P8W9 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
Hmgb4Q6P8W9 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC24.92■■□□□ 1.58
Hmgb4Q6P8W9 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
Hmgb4Q6P8W9 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Hmgb4Q6P8W9 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC24.9■■□□□ 1.58
Hmgb4Q6P8W9 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC24.9■■□□□ 1.58
Hmgb4Q6P8W9 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC24.88■■□□□ 1.57
Hmgb4Q6P8W9 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC24.88■■□□□ 1.57
Hmgb4Q6P8W9 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
Hmgb4Q6P8W9 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC24.87■■□□□ 1.57
Hmgb4Q6P8W9 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Hmgb4Q6P8W9 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Hmgb4Q6P8W9 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Hmgb4Q6P8W9 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC24.86■■□□□ 1.57
Hmgb4Q6P8W9 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Hmgb4Q6P8W9 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Hmgb4Q6P8W9 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
Hmgb4Q6P8W9 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC24.84■■□□□ 1.57
Hmgb4Q6P8W9 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
Hmgb4Q6P8W9 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC24.83■■□□□ 1.57
Hmgb4Q6P8W9 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC24.83■■□□□ 1.57
Hmgb4Q6P8W9 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC24.83■■□□□ 1.57
Hmgb4Q6P8W9 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC24.83■■□□□ 1.57
Hmgb4Q6P8W9 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Hmgb4Q6P8W9 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Hmgb4Q6P8W9 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC24.82■■□□□ 1.56
Hmgb4Q6P8W9 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC24.82■■□□□ 1.56
Hmgb4Q6P8W9 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Hmgb4Q6P8W9 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
Hmgb4Q6P8W9 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
Hmgb4Q6P8W9 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC24.81■■□□□ 1.56
Hmgb4Q6P8W9 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
Hmgb4Q6P8W9 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Hmgb4Q6P8W9 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC24.81■■□□□ 1.56
Hmgb4Q6P8W9 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
Hmgb4Q6P8W9 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC24.8■■□□□ 1.56
Hmgb4Q6P8W9 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Hmgb4Q6P8W9 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
Hmgb4Q6P8W9 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
Hmgb4Q6P8W9 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
Hmgb4Q6P8W9 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Hmgb4Q6P8W9 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC24.78■■□□□ 1.56
Hmgb4Q6P8W9 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Hmgb4Q6P8W9 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC24.77■■□□□ 1.56
Hmgb4Q6P8W9 Gm30023-201ENSMUST00000197970 889 ntBASIC24.76■■□□□ 1.55
Hmgb4Q6P8W9 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Hmgb4Q6P8W9 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC24.75■■□□□ 1.55
Hmgb4Q6P8W9 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC24.75■■□□□ 1.55
Hmgb4Q6P8W9 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
Hmgb4Q6P8W9 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC24.74■■□□□ 1.55
Hmgb4Q6P8W9 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
Hmgb4Q6P8W9 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC24.74■■□□□ 1.55
Hmgb4Q6P8W9 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
Hmgb4Q6P8W9 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC24.73■■□□□ 1.55
Hmgb4Q6P8W9 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC24.73■■□□□ 1.55
Hmgb4Q6P8W9 AC131739.1-201ENSMUST00000221692 1245 ntBASIC24.72■■□□□ 1.55
Hmgb4Q6P8W9 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Hmgb4Q6P8W9 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC24.71■■□□□ 1.55
Hmgb4Q6P8W9 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
Hmgb4Q6P8W9 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
Hmgb4Q6P8W9 Fezf2-202ENSMUST00000224023 1917 ntBASIC24.71■■□□□ 1.55
Hmgb4Q6P8W9 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC24.7■■□□□ 1.54
Hmgb4Q6P8W9 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC24.7■■□□□ 1.54
Hmgb4Q6P8W9 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Hmgb4Q6P8W9 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Hmgb4Q6P8W9 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Hmgb4Q6P8W9 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
Hmgb4Q6P8W9 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
Hmgb4Q6P8W9 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Hmgb4Q6P8W9 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Hmgb4Q6P8W9 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC24.67■■□□□ 1.54
Hmgb4Q6P8W9 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC24.67■■□□□ 1.54
Hmgb4Q6P8W9 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Hmgb4Q6P8W9 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Hmgb4Q6P8W9 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Hmgb4Q6P8W9 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC24.66■■□□□ 1.54
Hmgb4Q6P8W9 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Hmgb4Q6P8W9 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
Hmgb4Q6P8W9 Pcf11-205ENSMUST00000208255 1720 ntBASIC24.65■■□□□ 1.54
Hmgb4Q6P8W9 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
Hmgb4Q6P8W9 Gm11175-201ENSMUST00000116172 543 ntBASIC24.64■■□□□ 1.54
Retrieved 100 of 76,532 protein–RNA pairs in 131.5 ms