Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col7a1Q63870 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC21.04■□□□□ 0.96
Col7a1Q63870 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col7a1Q63870 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
Col7a1Q63870 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col7a1Q63870 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col7a1Q63870 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Col7a1Q63870 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC21.01■□□□□ 0.95
Col7a1Q63870 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col7a1Q63870 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC21.01■□□□□ 0.95
Col7a1Q63870 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col7a1Q63870 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC21■□□□□ 0.95
Col7a1Q63870 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col7a1Q63870 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col7a1Q63870 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC20.98■□□□□ 0.95
Col7a1Q63870 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC20.98■□□□□ 0.95
Col7a1Q63870 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col7a1Q63870 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Col7a1Q63870 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col7a1Q63870 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC20.96■□□□□ 0.95
Col7a1Q63870 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC20.96■□□□□ 0.95
Col7a1Q63870 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Col7a1Q63870 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
Col7a1Q63870 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col7a1Q63870 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Col7a1Q63870 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC20.95■□□□□ 0.94
Col7a1Q63870 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Col7a1Q63870 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col7a1Q63870 Gm15546-201ENSMUST00000122095 826 ntBASIC20.94■□□□□ 0.94
Col7a1Q63870 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col7a1Q63870 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col7a1Q63870 Gm5297-201ENSMUST00000198555 1171 ntBASIC20.94■□□□□ 0.94
Col7a1Q63870 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col7a1Q63870 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col7a1Q63870 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col7a1Q63870 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC20.91■□□□□ 0.94
Col7a1Q63870 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col7a1Q63870 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col7a1Q63870 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Col7a1Q63870 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Col7a1Q63870 Gm14523-201ENSMUST00000117260 558 ntBASIC20.9■□□□□ 0.94
Col7a1Q63870 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Col7a1Q63870 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col7a1Q63870 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC20.89■□□□□ 0.93
Col7a1Q63870 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col7a1Q63870 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Col7a1Q63870 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col7a1Q63870 Gm5921-201ENSMUST00000075898 882 ntBASIC20.88■□□□□ 0.93
Col7a1Q63870 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col7a1Q63870 Particl-201ENSMUST00000205370 1560 ntBASIC20.87■□□□□ 0.93
Col7a1Q63870 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Col7a1Q63870 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC20.87■□□□□ 0.93
Col7a1Q63870 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC20.86■□□□□ 0.93
Col7a1Q63870 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col7a1Q63870 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col7a1Q63870 Gm27502-201ENSMUST00000183495 199 ntBASIC20.86■□□□□ 0.93
Col7a1Q63870 AC093043.1-201ENSMUST00000226700 898 ntBASIC20.86■□□□□ 0.93
Col7a1Q63870 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Col7a1Q63870 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col7a1Q63870 Serp2-204ENSMUST00000228055 705 ntBASIC20.84■□□□□ 0.93
Col7a1Q63870 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC20.84■□□□□ 0.93
Col7a1Q63870 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
Col7a1Q63870 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC20.83■□□□□ 0.93
Col7a1Q63870 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC20.83■□□□□ 0.93
Col7a1Q63870 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC20.82■□□□□ 0.92
Col7a1Q63870 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC20.81■□□□□ 0.92
Col7a1Q63870 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col7a1Q63870 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Col7a1Q63870 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Col7a1Q63870 Gm5522-201ENSMUST00000189483 1242 ntBASIC20.78■□□□□ 0.92
Col7a1Q63870 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC20.78■□□□□ 0.92
Col7a1Q63870 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Col7a1Q63870 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Col7a1Q63870 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col7a1Q63870 Gm5067-201ENSMUST00000170449 1009 ntBASIC20.77■□□□□ 0.92
Col7a1Q63870 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC20.77■□□□□ 0.92
Col7a1Q63870 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC20.77■□□□□ 0.92
Col7a1Q63870 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Col7a1Q63870 Gm45364-201ENSMUST00000210883 159 ntBASIC20.77■□□□□ 0.91
Col7a1Q63870 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC20.77■□□□□ 0.91
Col7a1Q63870 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col7a1Q63870 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC20.75■□□□□ 0.91
Col7a1Q63870 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col7a1Q63870 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col7a1Q63870 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col7a1Q63870 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Col7a1Q63870 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col7a1Q63870 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col7a1Q63870 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col7a1Q63870 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
Col7a1Q63870 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col7a1Q63870 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col7a1Q63870 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col7a1Q63870 Pkd1-207ENSMUST00000228550 1050 ntBASIC20.73■□□□□ 0.91
Col7a1Q63870 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col7a1Q63870 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col7a1Q63870 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col7a1Q63870 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC20.72■□□□□ 0.91
Col7a1Q63870 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Col7a1Q63870 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 70.4 ms