Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC24.41■■□□□ 1.5
Six4Q61321 Gm9939-201ENSMUST00000067161 1154 ntBASIC24.41■■□□□ 1.5
Six4Q61321 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Six4Q61321 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC24.4■■□□□ 1.5
Six4Q61321 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Six4Q61321 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Six4Q61321 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Six4Q61321 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.49
Six4Q61321 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.49
Six4Q61321 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
Six4Q61321 Gm30023-201ENSMUST00000197970 889 ntBASIC24.38■■□□□ 1.49
Six4Q61321 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
Six4Q61321 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Six4Q61321 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
Six4Q61321 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
Six4Q61321 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC24.36■■□□□ 1.49
Six4Q61321 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC24.35■■□□□ 1.49
Six4Q61321 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC24.35■■□□□ 1.49
Six4Q61321 Nkain2-201ENSMUST00000092602 558 ntBASIC24.35■■□□□ 1.49
Six4Q61321 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC24.35■■□□□ 1.49
Six4Q61321 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Six4Q61321 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Six4Q61321 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
Six4Q61321 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC24.34■■□□□ 1.49
Six4Q61321 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Six4Q61321 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
Six4Q61321 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC24.32■■□□□ 1.48
Six4Q61321 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Six4Q61321 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Six4Q61321 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Six4Q61321 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Six4Q61321 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
Six4Q61321 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
Six4Q61321 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
Six4Q61321 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
Six4Q61321 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Six4Q61321 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Six4Q61321 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Six4Q61321 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Six4Q61321 Gm6821-201ENSMUST00000107540 542 ntBASIC24.28■■□□□ 1.48
Six4Q61321 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Six4Q61321 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
Six4Q61321 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC24.28■■□□□ 1.48
Six4Q61321 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC24.27■■□□□ 1.48
Six4Q61321 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
Six4Q61321 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Six4Q61321 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC24.26■■□□□ 1.47
Six4Q61321 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Six4Q61321 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC24.26■■□□□ 1.47
Six4Q61321 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Six4Q61321 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Six4Q61321 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Six4Q61321 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Six4Q61321 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Six4Q61321 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
Six4Q61321 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Six4Q61321 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Six4Q61321 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Six4Q61321 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC24.22■■□□□ 1.47
Six4Q61321 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
Six4Q61321 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Six4Q61321 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Six4Q61321 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Six4Q61321 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Six4Q61321 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
Six4Q61321 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
Six4Q61321 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Six4Q61321 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC24.2■■□□□ 1.46
Six4Q61321 Gm8503-201ENSMUST00000118131 455 ntBASIC24.2■■□□□ 1.46
Six4Q61321 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Six4Q61321 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC24.2■■□□□ 1.46
Six4Q61321 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC24.2■■□□□ 1.46
Six4Q61321 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC24.18■■□□□ 1.46
Six4Q61321 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC24.17■■□□□ 1.46
Six4Q61321 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC24.16■■□□□ 1.46
Six4Q61321 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Six4Q61321 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Six4Q61321 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC24.16■■□□□ 1.46
Six4Q61321 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Six4Q61321 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
Six4Q61321 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Six4Q61321 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC24.12■■□□□ 1.45
Six4Q61321 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
Six4Q61321 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC24.12■■□□□ 1.45
Six4Q61321 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Six4Q61321 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Six4Q61321 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC24.1■■□□□ 1.45
Six4Q61321 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
Six4Q61321 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC24.1■■□□□ 1.45
Six4Q61321 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC24.09■■□□□ 1.45
Six4Q61321 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Six4Q61321 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
Six4Q61321 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC24.06■■□□□ 1.44
Six4Q61321 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC24.05■■□□□ 1.44
Six4Q61321 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Six4Q61321 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC24.04■■□□□ 1.44
Six4Q61321 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Six4Q61321 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Six4Q61321 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Six4Q61321 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC24.03■■□□□ 1.44
Retrieved 100 of 76,532 protein–RNA pairs in 10.3 ms