Protein–RNA interactions for Protein: Q5R1H8

Trav8d-1, T cell receptor alpha variable 8D-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-1Q5R1H8 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trav8d-1Q5R1H8 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trav8d-1Q5R1H8 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trav8d-1Q5R1H8 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Trav8d-1Q5R1H8 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Trav8d-1Q5R1H8 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trav8d-1Q5R1H8 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Trav8d-1Q5R1H8 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trav8d-1Q5R1H8 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Trav8d-1Q5R1H8 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trav8d-1Q5R1H8 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trav8d-1Q5R1H8 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trav8d-1Q5R1H8 Tdp2-203ENSMUST00000223804 1136 ntBASIC19.27■□□□□ 0.68
Trav8d-1Q5R1H8 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Trav8d-1Q5R1H8 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trav8d-1Q5R1H8 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trav8d-1Q5R1H8 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
Trav8d-1Q5R1H8 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC19.25■□□□□ 0.67
Trav8d-1Q5R1H8 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav8d-1Q5R1H8 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Trav8d-1Q5R1H8 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav8d-1Q5R1H8 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Trav8d-1Q5R1H8 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trav8d-1Q5R1H8 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav8d-1Q5R1H8 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav8d-1Q5R1H8 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav8d-1Q5R1H8 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav8d-1Q5R1H8 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trav8d-1Q5R1H8 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
Trav8d-1Q5R1H8 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Trav8d-1Q5R1H8 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC19.23■□□□□ 0.67
Trav8d-1Q5R1H8 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC19.23■□□□□ 0.67
Trav8d-1Q5R1H8 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC19.22■□□□□ 0.67
Trav8d-1Q5R1H8 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Trav8d-1Q5R1H8 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trav8d-1Q5R1H8 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trav8d-1Q5R1H8 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trav8d-1Q5R1H8 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trav8d-1Q5R1H8 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Trav8d-1Q5R1H8 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav8d-1Q5R1H8 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav8d-1Q5R1H8 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav8d-1Q5R1H8 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Trav8d-1Q5R1H8 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav8d-1Q5R1H8 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Trav8d-1Q5R1H8 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Trav8d-1Q5R1H8 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav8d-1Q5R1H8 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Trav8d-1Q5R1H8 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trav8d-1Q5R1H8 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trav8d-1Q5R1H8 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trav8d-1Q5R1H8 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC19.19■□□□□ 0.66
Trav8d-1Q5R1H8 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trav8d-1Q5R1H8 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trav8d-1Q5R1H8 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trav8d-1Q5R1H8 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC19.17■□□□□ 0.66
Trav8d-1Q5R1H8 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trav8d-1Q5R1H8 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Trav8d-1Q5R1H8 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trav8d-1Q5R1H8 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trav8d-1Q5R1H8 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav8d-1Q5R1H8 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav8d-1Q5R1H8 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav8d-1Q5R1H8 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav8d-1Q5R1H8 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Trav8d-1Q5R1H8 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trav8d-1Q5R1H8 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.66
Trav8d-1Q5R1H8 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Trav8d-1Q5R1H8 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Trav8d-1Q5R1H8 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Trav8d-1Q5R1H8 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trav8d-1Q5R1H8 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trav8d-1Q5R1H8 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trav8d-1Q5R1H8 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trav8d-1Q5R1H8 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trav8d-1Q5R1H8 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trav8d-1Q5R1H8 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trav8d-1Q5R1H8 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trav8d-1Q5R1H8 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Trav8d-1Q5R1H8 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trav8d-1Q5R1H8 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC19.11■□□□□ 0.65
Trav8d-1Q5R1H8 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
Trav8d-1Q5R1H8 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trav8d-1Q5R1H8 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
Trav8d-1Q5R1H8 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav8d-1Q5R1H8 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav8d-1Q5R1H8 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav8d-1Q5R1H8 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC19.1■□□□□ 0.65
Trav8d-1Q5R1H8 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trav8d-1Q5R1H8 AC122428.3-201ENSMUST00000215551 2290 ntBASIC19.07■□□□□ 0.64
Trav8d-1Q5R1H8 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav8d-1Q5R1H8 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav8d-1Q5R1H8 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC19.06■□□□□ 0.64
Trav8d-1Q5R1H8 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Trav8d-1Q5R1H8 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trav8d-1Q5R1H8 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trav8d-1Q5R1H8 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trav8d-1Q5R1H8 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Trav8d-1Q5R1H8 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trav8d-1Q5R1H8 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms