Protein–RNA interactions for Protein: Q5R1C3

Trav3-3, T cell receptor alpha variable 3-3 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-3Q5R1C3 Mipep-204ENSMUST00000225043 1548 ntBASIC17.79■□□□□ 0.44
Trav3-3Q5R1C3 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Trav3-3Q5R1C3 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav3-3Q5R1C3 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav3-3Q5R1C3 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav3-3Q5R1C3 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trav3-3Q5R1C3 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trav3-3Q5R1C3 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trav3-3Q5R1C3 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Trav3-3Q5R1C3 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav3-3Q5R1C3 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav3-3Q5R1C3 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Trav3-3Q5R1C3 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav3-3Q5R1C3 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav3-3Q5R1C3 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
Trav3-3Q5R1C3 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav3-3Q5R1C3 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav3-3Q5R1C3 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trav3-3Q5R1C3 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC17.75■□□□□ 0.43
Trav3-3Q5R1C3 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trav3-3Q5R1C3 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
Trav3-3Q5R1C3 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav3-3Q5R1C3 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav3-3Q5R1C3 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav3-3Q5R1C3 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav3-3Q5R1C3 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trav3-3Q5R1C3 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav3-3Q5R1C3 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trav3-3Q5R1C3 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC17.73■□□□□ 0.43
Trav3-3Q5R1C3 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trav3-3Q5R1C3 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trav3-3Q5R1C3 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trav3-3Q5R1C3 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Trav3-3Q5R1C3 Gm6345-201ENSMUST00000180378 1691 ntBASIC17.71■□□□□ 0.43
Trav3-3Q5R1C3 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
Trav3-3Q5R1C3 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC17.7■□□□□ 0.42
Trav3-3Q5R1C3 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trav3-3Q5R1C3 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trav3-3Q5R1C3 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trav3-3Q5R1C3 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trav3-3Q5R1C3 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trav3-3Q5R1C3 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trav3-3Q5R1C3 Gm6277-202ENSMUST00000224036 2779 ntBASIC17.68■□□□□ 0.42
Trav3-3Q5R1C3 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trav3-3Q5R1C3 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Trav3-3Q5R1C3 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trav3-3Q5R1C3 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trav3-3Q5R1C3 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Trav3-3Q5R1C3 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trav3-3Q5R1C3 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Trav3-3Q5R1C3 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trav3-3Q5R1C3 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav3-3Q5R1C3 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trav3-3Q5R1C3 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav3-3Q5R1C3 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC17.66■□□□□ 0.42
Trav3-3Q5R1C3 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC17.66■□□□□ 0.42
Trav3-3Q5R1C3 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Trav3-3Q5R1C3 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav3-3Q5R1C3 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav3-3Q5R1C3 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Trav3-3Q5R1C3 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC17.65■□□□□ 0.42
Trav3-3Q5R1C3 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC17.64■□□□□ 0.41
Trav3-3Q5R1C3 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trav3-3Q5R1C3 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trav3-3Q5R1C3 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Trav3-3Q5R1C3 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav3-3Q5R1C3 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Trav3-3Q5R1C3 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav3-3Q5R1C3 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav3-3Q5R1C3 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav3-3Q5R1C3 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav3-3Q5R1C3 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav3-3Q5R1C3 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trav3-3Q5R1C3 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trav3-3Q5R1C3 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trav3-3Q5R1C3 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trav3-3Q5R1C3 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav3-3Q5R1C3 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav3-3Q5R1C3 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav3-3Q5R1C3 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav3-3Q5R1C3 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC17.58■□□□□ 0.4
Trav3-3Q5R1C3 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trav3-3Q5R1C3 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trav3-3Q5R1C3 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav3-3Q5R1C3 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav3-3Q5R1C3 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Trav3-3Q5R1C3 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav3-3Q5R1C3 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Trav3-3Q5R1C3 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav3-3Q5R1C3 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC17.57■□□□□ 0.4
Trav3-3Q5R1C3 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC17.57■□□□□ 0.4
Trav3-3Q5R1C3 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC17.57■□□□□ 0.4
Trav3-3Q5R1C3 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Trav3-3Q5R1C3 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav3-3Q5R1C3 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trav3-3Q5R1C3 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav3-3Q5R1C3 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trav3-3Q5R1C3 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Trav3-3Q5R1C3 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Trav3-3Q5R1C3 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms