Protein–RNA interactions for Protein: P53960

YNL040W, Putative alanyl-tRNA editing protein alaX, yeastyeast

Predicted RBP Predictions only

Length 456 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
YNL040WP53960 tD(GUC)KtD(GUC)K 72 nt8.74□□□□□ -1.01
YNL040WP53960 tD(GUC)L1tD(GUC)L1 72 nt8.74□□□□□ -1.01
YNL040WP53960 tD(GUC)L2tD(GUC)L2 72 nt8.74□□□□□ -1.01
YNL040WP53960 tD(GUC)MtD(GUC)M 72 nt8.74□□□□□ -1.01
YNL040WP53960 tD(GUC)OtD(GUC)O 72 nt8.74□□□□□ -1.01
YNL040WP53960 KGD2YDR148C 1392 nt8.73□□□□□ -1.01
YNL040WP53960 tE(CUC)DtE(CUC)D 72 nt8.73□□□□□ -1.01
YNL040WP53960 tE(CUC)ItE(CUC)I 72 nt8.73□□□□□ -1.01
YNL040WP53960 YJL064WYJL064W 396 nt8.73□□□□□ -1.01
YNL040WP53960 NAP1YKR048C 1254 nt8.73□□□□□ -1.01
YNL040WP53960 SAN1YDR143C 1833 nt8.73□□□□□ -1.01
YNL040WP53960 YDR467CYDR467C 327 nt8.72□□□□□ -1.01
YNL040WP53960 GID7YCL039W 2238 nt8.7□□□□□ -1.02
YNL040WP53960 SRP54YPR088C 1626 nt8.7□□□□□ -1.02
YNL040WP53960 PHB2YGR231C 933 nt8.7□□□□□ -1.02
YNL040WP53960 YKR012CYKR012C 378 nt8.7□□□□□ -1.02
YNL040WP53960 REX2YLR059C 810 nt8.7□□□□□ -1.02
YNL040WP53960 ADH3YMR083W 1128 nt8.69□□□□□ -1.02
YNL040WP53960 TRP2YER090W 1524 nt8.69□□□□□ -1.02
YNL040WP53960 tA(AGC)DtA(AGC)D 73 nt8.68□□□□□ -1.02
YNL040WP53960 tA(AGC)FtA(AGC)F 73 nt8.68□□□□□ -1.02
YNL040WP53960 tA(AGC)GtA(AGC)G 73 nt8.68□□□□□ -1.02
YNL040WP53960 tA(AGC)HtA(AGC)H 73 nt8.68□□□□□ -1.02
YNL040WP53960 tA(AGC)JtA(AGC)J 73 nt8.68□□□□□ -1.02
YNL040WP53960 tA(AGC)K1tA(AGC)K1 73 nt8.68□□□□□ -1.02
YNL040WP53960 tA(AGC)K2tA(AGC)K2 73 nt8.68□□□□□ -1.02
YNL040WP53960 tA(AGC)LtA(AGC)L 73 nt8.68□□□□□ -1.02
YNL040WP53960 tA(AGC)M1tA(AGC)M1 73 nt8.68□□□□□ -1.02
YNL040WP53960 tA(AGC)M2tA(AGC)M2 73 nt8.68□□□□□ -1.02
YNL040WP53960 tA(AGC)PtA(AGC)P 73 nt8.68□□□□□ -1.02
YNL040WP53960 MIM1YOL026C 342 nt8.68□□□□□ -1.02
YNL040WP53960 PAU19YMR325W 375 nt8.67□□□□□ -1.02
YNL040WP53960 SDS24YBR214W 1584 nt8.66□□□□□ -1.02
YNL040WP53960 IPL1YPL209C 1104 nt8.66□□□□□ -1.02
YNL040WP53960 MTO1YGL236C 2010 nt8.66□□□□□ -1.02
YNL040WP53960 SBP1YHL034C 885 nt8.65□□□□□ -1.02
YNL040WP53960 FLX1YIL134W 936 nt8.65□□□□□ -1.02
YNL040WP53960 MDL2YPL270W 2322 nt8.65□□□□□ -1.03
YNL040WP53960 MOB1YIL106W 945 nt8.64□□□□□ -1.03
YNL040WP53960 THI6YPL214C 1623 nt8.64□□□□□ -1.03
YNL040WP53960 GPM1YKL152C 744 nt8.63□□□□□ -1.03
YNL040WP53960 HXT11YOL156W 1704 nt8.63□□□□□ -1.03
YNL040WP53960 VBA3YCL069W 1377 nt8.62□□□□□ -1.03
YNL040WP53960 HBS1YKR084C 1836 nt8.62□□□□□ -1.03
YNL040WP53960 YPT11YNL304W 1254 nt8.61□□□□□ -1.03
YNL040WP53960 GAS1YMR307W 1680 nt8.6□□□□□ -1.03
YNL040WP53960 DUR3YHL016C 2208 nt8.6□□□□□ -1.03
YNL040WP53960 THI3YDL080C 1830 nt8.6□□□□□ -1.03
YNL040WP53960 SRM1YGL097W 1449 nt8.6□□□□□ -1.03
YNL040WP53960 GGA2YHR108W 1758 nt8.6□□□□□ -1.03
YNL040WP53960 AAT1YKL106W 1356 nt8.6□□□□□ -1.03
YNL040WP53960 YRF1-2YER190W 5046 nt8.59□□□□□ -1.03
YNL040WP53960 PTC6YCR079W 1329 nt8.59□□□□□ -1.03
YNL040WP53960 YMR316C-BYMR316C-B 309 nt8.59□□□□□ -1.03
YNL040WP53960 ENO1YGR254W 1314 nt8.58□□□□□ -1.04
YNL040WP53960 EMC3YKL207W 762 nt8.58□□□□□ -1.04
YNL040WP53960 YBL095WYBL095W 813 nt8.58□□□□□ -1.04
YNL040WP53960 YCR025CYCR025C 411 nt8.57□□□□□ -1.04
YNL040WP53960 CYC3YAL039C 810 nt8.56□□□□□ -1.04
YNL040WP53960 SLG1YOR008C 1137 nt8.56□□□□□ -1.04
YNL040WP53960 FTH1YBR207W 1398 nt8.54□□□□□ -1.04
YNL040WP53960 YMC2YBR104W 990 nt8.54□□□□□ -1.04
YNL040WP53960 LYS20YDL182W 1287 nt8.53□□□□□ -1.04
YNL040WP53960 YFR020WYFR020W 699 nt8.53□□□□□ -1.04
YNL040WP53960 SRP102YKL154W 735 nt8.52□□□□□ -1.05
YNL040WP53960 ORT1YOR130C 879 nt8.52□□□□□ -1.05
YNL040WP53960 DUS3YLR401C 2007 nt8.52□□□□□ -1.05
YNL040WP53960 snR4snR4 186 nt8.51□□□□□ -1.05
YNL040WP53960 YLR072WYLR072W 2082 nt8.5□□□□□ -1.05
YNL040WP53960 SER2YGR208W 930 nt8.5□□□□□ -1.05
YNL040WP53960 RSM7YJR113C 744 nt8.5□□□□□ -1.05
YNL040WP53960 YLR280CYLR280C 351 nt8.5□□□□□ -1.05
YNL040WP53960 ERO1YML130C 1692 nt8.47□□□□□ -1.05
YNL040WP53960 FIT1YDR534C 1587 nt8.47□□□□□ -1.05
YNL040WP53960 UFD1YGR048W 1086 nt8.46□□□□□ -1.06
YNL040WP53960 AAC3YBR085W 924 nt8.46□□□□□ -1.06
YNL040WP53960 HTS1YPR033C 1641 nt8.45□□□□□ -1.06
YNL040WP53960 MRS4YKR052C 915 nt8.45□□□□□ -1.06
YNL040WP53960 YMR210WYMR210W 1350 nt8.45□□□□□ -1.06
YNL040WP53960 FRE6YLL051C 2139 nt8.44□□□□□ -1.06
YNL040WP53960 SAM50YNL026W 1455 nt8.44□□□□□ -1.06
YNL040WP53960 YCP4YCR004C 744 nt8.43□□□□□ -1.06
YNL040WP53960 SWM1YDR260C 513 nt8.43□□□□□ -1.06
YNL040WP53960 TMS1YDR105C 1422 nt8.43□□□□□ -1.06
YNL040WP53960 snR86snR86 1004 nt8.42□□□□□ -1.06
YNL040WP53960 YGR210CYGR210C 1236 nt8.42□□□□□ -1.06
YNL040WP53960 TPN1YGL186C 1740 nt8.41□□□□□ -1.06
YNL040WP53960 POP2YNR052C 1302 nt8.41□□□□□ -1.06
YNL040WP53960 TGA1tA(UGC)A 73 nt8.41□□□□□ -1.06
YNL040WP53960 tA(UGC)EtA(UGC)E 73 nt8.41□□□□□ -1.06
YNL040WP53960 tA(UGC)GtA(UGC)G 73 nt8.41□□□□□ -1.06
YNL040WP53960 tA(UGC)LtA(UGC)L 73 nt8.41□□□□□ -1.06
YNL040WP53960 tA(UGC)OtA(UGC)O 73 nt8.41□□□□□ -1.06
YNL040WP53960 LEA1YPL213W 717 nt8.41□□□□□ -1.06
YNL040WP53960 ABP1YCR088W 1779 nt8.4□□□□□ -1.06
YNL040WP53960 YLR460CYLR460C 1131 nt8.39□□□□□ -1.07
YNL040WP53960 YIR035CYIR035C 765 nt8.38□□□□□ -1.07
YNL040WP53960 ADE16YLR028C 1776 nt8.36□□□□□ -1.07
YNL040WP53960 YJR149WYJR149W 1215 nt8.36□□□□□ -1.07
YNL040WP53960 MET22YOL064C 1074 nt8.36□□□□□ -1.07
Retrieved 100 of 7,029 protein–RNA pairs in 14.9 ms