Protein–RNA interactions for Protein: P40080

VFA1, VPS4-associated protein 1, yeastyeast

Predictions only

Length 203 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VFA1P40080 ADH3YMR083W 1128 nt8.95□□□□□ -0.98
VFA1P40080 HXT11YOL156W 1704 nt8.94□□□□□ -0.98
VFA1P40080 tD(GUC)BtD(GUC)B 72 nt8.94□□□□□ -0.98
VFA1P40080 tD(GUC)DtD(GUC)D 72 nt8.94□□□□□ -0.98
VFA1P40080 tD(GUC)G1tD(GUC)G1 72 nt8.94□□□□□ -0.98
VFA1P40080 tD(GUC)G2tD(GUC)G2 72 nt8.94□□□□□ -0.98
VFA1P40080 tD(GUC)I1tD(GUC)I1 72 nt8.94□□□□□ -0.98
VFA1P40080 tD(GUC)I2tD(GUC)I2 72 nt8.94□□□□□ -0.98
VFA1P40080 tD(GUC)J1tD(GUC)J1 72 nt8.94□□□□□ -0.98
VFA1P40080 tD(GUC)J2tD(GUC)J2 72 nt8.94□□□□□ -0.98
VFA1P40080 tD(GUC)J3tD(GUC)J3 72 nt8.94□□□□□ -0.98
VFA1P40080 tD(GUC)J4tD(GUC)J4 72 nt8.94□□□□□ -0.98
VFA1P40080 tD(GUC)KtD(GUC)K 72 nt8.94□□□□□ -0.98
VFA1P40080 tD(GUC)L1tD(GUC)L1 72 nt8.94□□□□□ -0.98
VFA1P40080 tD(GUC)L2tD(GUC)L2 72 nt8.94□□□□□ -0.98
VFA1P40080 tD(GUC)MtD(GUC)M 72 nt8.94□□□□□ -0.98
VFA1P40080 tD(GUC)OtD(GUC)O 72 nt8.94□□□□□ -0.98
VFA1P40080 PHB2YGR231C 933 nt8.94□□□□□ -0.98
VFA1P40080 tS(GCU)LtS(GCU)L 80 nt8.94□□□□□ -0.98
VFA1P40080 EMC3YKL207W 762 nt8.94□□□□□ -0.98
VFA1P40080 STP3YLR375W 1032 nt8.94□□□□□ -0.98
VFA1P40080 SDS24YBR214W 1584 nt8.94□□□□□ -0.98
VFA1P40080 YPT11YNL304W 1254 nt8.93□□□□□ -0.98
VFA1P40080 ALD5YER073W 1563 nt8.92□□□□□ -0.98
VFA1P40080 YOR072WYOR072W 315 nt8.92□□□□□ -0.98
VFA1P40080 AAC3YBR085W 924 nt8.92□□□□□ -0.98
VFA1P40080 TPN1YGL186C 1740 nt8.91□□□□□ -0.98
VFA1P40080 VBA3YCL069W 1377 nt8.91□□□□□ -0.98
VFA1P40080 PAR32YDL173W 888 nt8.91□□□□□ -0.98
VFA1P40080 HXK1YFR053C 1458 nt8.89□□□□□ -0.99
VFA1P40080 SRM1YGL097W 1449 nt8.89□□□□□ -0.99
VFA1P40080 snR86snR86 1004 nt8.89□□□□□ -0.99
VFA1P40080 MOB1YIL106W 945 nt8.89□□□□□ -0.99
VFA1P40080 YRF1-2YER190W 5046 nt8.88□□□□□ -0.99
VFA1P40080 MIM1YOL026C 342 nt8.88□□□□□ -0.99
VFA1P40080 YBR232CYBR232C 360 nt8.88□□□□□ -0.99
VFA1P40080 YLR072WYLR072W 2082 nt8.87□□□□□ -0.99
VFA1P40080 SFP1YLR403W 2052 nt8.87□□□□□ -0.99
VFA1P40080 TMS1YDR105C 1422 nt8.86□□□□□ -0.99
VFA1P40080 tA(AGC)DtA(AGC)D 73 nt8.84□□□□□ -0.99
VFA1P40080 tA(AGC)FtA(AGC)F 73 nt8.84□□□□□ -0.99
VFA1P40080 tA(AGC)GtA(AGC)G 73 nt8.84□□□□□ -0.99
VFA1P40080 tA(AGC)HtA(AGC)H 73 nt8.84□□□□□ -0.99
VFA1P40080 tA(AGC)JtA(AGC)J 73 nt8.84□□□□□ -0.99
VFA1P40080 tA(AGC)K1tA(AGC)K1 73 nt8.84□□□□□ -0.99
VFA1P40080 tA(AGC)K2tA(AGC)K2 73 nt8.84□□□□□ -0.99
VFA1P40080 tA(AGC)LtA(AGC)L 73 nt8.84□□□□□ -0.99
VFA1P40080 tA(AGC)M1tA(AGC)M1 73 nt8.84□□□□□ -0.99
VFA1P40080 tA(AGC)M2tA(AGC)M2 73 nt8.84□□□□□ -0.99
VFA1P40080 tA(AGC)PtA(AGC)P 73 nt8.84□□□□□ -0.99
VFA1P40080 YJL009WYJL009W 327 nt8.84□□□□□ -0.99
VFA1P40080 ENO1YGR254W 1314 nt8.83□□□□□ -1
VFA1P40080 MEX67YPL169C 1800 nt8.83□□□□□ -1
VFA1P40080 FLX1YIL134W 936 nt8.83□□□□□ -1
VFA1P40080 RSM7YJR113C 744 nt8.83□□□□□ -1
VFA1P40080 HBS1YKR084C 1836 nt8.82□□□□□ -1
VFA1P40080 LYS20YDL182W 1287 nt8.82□□□□□ -1
VFA1P40080 YJR149WYJR149W 1215 nt8.81□□□□□ -1
VFA1P40080 MEP1YGR121C 1479 nt8.81□□□□□ -1
VFA1P40080 HMG2YLR450W 3138 nt8.8□□□□□ -1
VFA1P40080 YFR020WYFR020W 699 nt8.8□□□□□ -1
VFA1P40080 IPL1YPL209C 1104 nt8.8□□□□□ -1
VFA1P40080 YMR210WYMR210W 1350 nt8.8□□□□□ -1
VFA1P40080 FTH1YBR207W 1398 nt8.8□□□□□ -1
VFA1P40080 ORT1YOR130C 879 nt8.78□□□□□ -1
VFA1P40080 LEA1YPL213W 717 nt8.78□□□□□ -1
VFA1P40080 YBR056WYBR056W 1506 nt8.78□□□□□ -1
VFA1P40080 ABP1YCR088W 1779 nt8.78□□□□□ -1
VFA1P40080 DUR3YHL016C 2208 nt8.77□□□□□ -1.01
VFA1P40080 MET8YBR213W 825 nt8.76□□□□□ -1.01
VFA1P40080 YLR280CYLR280C 351 nt8.75□□□□□ -1.01
VFA1P40080 BUB2YMR055C 921 nt8.75□□□□□ -1.01
VFA1P40080 YIR035CYIR035C 765 nt8.74□□□□□ -1.01
VFA1P40080 CYC3YAL039C 810 nt8.74□□□□□ -1.01
VFA1P40080 HIS3YOR202W 663 nt8.74□□□□□ -1.01
VFA1P40080 snR4snR4 186 nt8.74□□□□□ -1.01
VFA1P40080 SEN2YLR105C 1134 nt8.72□□□□□ -1.01
VFA1P40080 YCR025CYCR025C 411 nt8.71□□□□□ -1.02
VFA1P40080 YJL064WYJL064W 396 nt8.71□□□□□ -1.02
VFA1P40080 SRP102YKL154W 735 nt8.71□□□□□ -1.02
VFA1P40080 Q0010Q0010 387 nt8.71□□□□□ -1.02
VFA1P40080 ERO1YML130C 1692 nt8.7□□□□□ -1.02
VFA1P40080 YLR460CYLR460C 1131 nt8.69□□□□□ -1.02
VFA1P40080 YJR154WYJR154W 1041 nt8.68□□□□□ -1.02
VFA1P40080 RNA170RNA170 169 nt8.68□□□□□ -1.02
VFA1P40080 INO1YJL153C 1602 nt8.68□□□□□ -1.02
VFA1P40080 MET22YOL064C 1074 nt8.66□□□□□ -1.02
VFA1P40080 PAU19YMR325W 375 nt8.65□□□□□ -1.02
VFA1P40080 TGA1tA(UGC)A 73 nt8.64□□□□□ -1.03
VFA1P40080 tA(UGC)EtA(UGC)E 73 nt8.64□□□□□ -1.03
VFA1P40080 tA(UGC)GtA(UGC)G 73 nt8.64□□□□□ -1.03
VFA1P40080 tA(UGC)LtA(UGC)L 73 nt8.64□□□□□ -1.03
VFA1P40080 tA(UGC)OtA(UGC)O 73 nt8.64□□□□□ -1.03
VFA1P40080 SER2YGR208W 930 nt8.64□□□□□ -1.03
VFA1P40080 CHS7YHR142W 951 nt8.64□□□□□ -1.03
VFA1P40080 DUS3YLR401C 2007 nt8.64□□□□□ -1.03
VFA1P40080 BUD31YCR063W 474 nt8.63□□□□□ -1.03
VFA1P40080 OLA1YBR025C 1185 nt8.63□□□□□ -1.03
VFA1P40080 LRO1YNR008W 1986 nt8.62□□□□□ -1.03
VFA1P40080 YDR510C-AYDR510C-A 117 nt8.62□□□□□ -1.03
Retrieved 100 of 7,029 protein–RNA pairs in 68.3 ms