Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col6a4A2AX52 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col6a4A2AX52 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col6a4A2AX52 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC20.49■□□□□ 0.87
Col6a4A2AX52 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Col6a4A2AX52 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC20.49■□□□□ 0.87
Col6a4A2AX52 Gm6658-202ENSMUST00000209493 1885 ntBASIC20.48■□□□□ 0.87
Col6a4A2AX52 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col6a4A2AX52 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col6a4A2AX52 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col6a4A2AX52 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Col6a4A2AX52 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
Col6a4A2AX52 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Col6a4A2AX52 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Col6a4A2AX52 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Col6a4A2AX52 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Col6a4A2AX52 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC20.43■□□□□ 0.86
Col6a4A2AX52 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Col6a4A2AX52 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col6a4A2AX52 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Col6a4A2AX52 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Col6a4A2AX52 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col6a4A2AX52 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Col6a4A2AX52 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col6a4A2AX52 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC20.39■□□□□ 0.85
Col6a4A2AX52 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Col6a4A2AX52 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col6a4A2AX52 Gm16437-201ENSMUST00000025669 507 ntBASIC20.39■□□□□ 0.85
Col6a4A2AX52 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col6a4A2AX52 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col6a4A2AX52 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Col6a4A2AX52 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col6a4A2AX52 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC20.37■□□□□ 0.85
Col6a4A2AX52 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col6a4A2AX52 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col6a4A2AX52 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Col6a4A2AX52 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col6a4A2AX52 Gm7332-201ENSMUST00000118351 454 ntBASIC20.35■□□□□ 0.85
Col6a4A2AX52 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC20.35■□□□□ 0.85
Col6a4A2AX52 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Col6a4A2AX52 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC20.33■□□□□ 0.85
Col6a4A2AX52 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col6a4A2AX52 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Col6a4A2AX52 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Col6a4A2AX52 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col6a4A2AX52 Particl-201ENSMUST00000205370 1560 ntBASIC20.31■□□□□ 0.84
Col6a4A2AX52 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Col6a4A2AX52 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Col6a4A2AX52 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col6a4A2AX52 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col6a4A2AX52 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Col6a4A2AX52 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col6a4A2AX52 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC20.3■□□□□ 0.84
Col6a4A2AX52 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col6a4A2AX52 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col6a4A2AX52 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col6a4A2AX52 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Col6a4A2AX52 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC20.28■□□□□ 0.84
Col6a4A2AX52 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC20.28■□□□□ 0.84
Col6a4A2AX52 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col6a4A2AX52 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col6a4A2AX52 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col6a4A2AX52 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col6a4A2AX52 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col6a4A2AX52 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col6a4A2AX52 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col6a4A2AX52 Scarna2-201ENSMUST00000157560 414 ntBASIC20.27■□□□□ 0.84
Col6a4A2AX52 Gm4799-201ENSMUST00000095396 657 ntBASIC20.27■□□□□ 0.84
Col6a4A2AX52 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col6a4A2AX52 Gm11687-201ENSMUST00000118911 886 ntBASIC20.25■□□□□ 0.83
Col6a4A2AX52 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col6a4A2AX52 Gm15039-201ENSMUST00000118914 875 ntBASIC20.25■□□□□ 0.83
Col6a4A2AX52 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col6a4A2AX52 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col6a4A2AX52 Gm9806-201ENSMUST00000051080 552 ntBASIC20.23■□□□□ 0.83
Col6a4A2AX52 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col6a4A2AX52 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC20.22■□□□□ 0.83
Col6a4A2AX52 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col6a4A2AX52 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col6a4A2AX52 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col6a4A2AX52 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC20.2■□□□□ 0.82
Col6a4A2AX52 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC20.2■□□□□ 0.82
Col6a4A2AX52 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC20.19■□□□□ 0.82
Col6a4A2AX52 Pkd1-207ENSMUST00000228550 1050 ntBASIC20.19■□□□□ 0.82
Col6a4A2AX52 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col6a4A2AX52 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Col6a4A2AX52 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col6a4A2AX52 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Col6a4A2AX52 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Col6a4A2AX52 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col6a4A2AX52 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col6a4A2AX52 Gm45364-201ENSMUST00000210883 159 ntBASIC20.18■□□□□ 0.82
Col6a4A2AX52 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col6a4A2AX52 Gm5812-201ENSMUST00000061073 957 ntBASIC20.18■□□□□ 0.82
Col6a4A2AX52 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col6a4A2AX52 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col6a4A2AX52 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col6a4A2AX52 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col6a4A2AX52 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col6a4A2AX52 Pcf11-205ENSMUST00000208255 1720 ntBASIC20.16■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 42.8 ms