Protein–RNA interactions for Protein: A2AN08

Ubr4, E3 ubiquitin-protein ligase UBR4, mousemouse

Predictions only

Length 5,180 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr4A2AN08 Gm5921-201ENSMUST00000075898 882 ntBASIC13.43□□□□□ -0.26
Ubr4A2AN08 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Ubr4A2AN08 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC13.42□□□□□ -0.26
Ubr4A2AN08 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ubr4A2AN08 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ubr4A2AN08 Gm5067-201ENSMUST00000170449 1009 ntBASIC13.41□□□□□ -0.26
Ubr4A2AN08 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Ubr4A2AN08 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Ubr4A2AN08 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ubr4A2AN08 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ubr4A2AN08 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC13.38□□□□□ -0.27
Ubr4A2AN08 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ubr4A2AN08 Gm16437-201ENSMUST00000025669 507 ntBASIC13.38□□□□□ -0.27
Ubr4A2AN08 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Ubr4A2AN08 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC13.38□□□□□ -0.27
Ubr4A2AN08 Rps24-207ENSMUST00000224568 714 ntBASIC13.37□□□□□ -0.27
Ubr4A2AN08 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Ubr4A2AN08 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ubr4A2AN08 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC13.37□□□□□ -0.27
Ubr4A2AN08 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Ubr4A2AN08 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ubr4A2AN08 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC13.36□□□□□ -0.27
Ubr4A2AN08 Gm5522-201ENSMUST00000189483 1242 ntBASIC13.36□□□□□ -0.27
Ubr4A2AN08 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ubr4A2AN08 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ubr4A2AN08 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ubr4A2AN08 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ubr4A2AN08 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Ubr4A2AN08 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Ubr4A2AN08 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.27
Ubr4A2AN08 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC13.34□□□□□ -0.27
Ubr4A2AN08 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ubr4A2AN08 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC13.33□□□□□ -0.28
Ubr4A2AN08 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Ubr4A2AN08 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Ubr4A2AN08 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
Ubr4A2AN08 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Ubr4A2AN08 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC13.33□□□□□ -0.28
Ubr4A2AN08 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ubr4A2AN08 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC13.32□□□□□ -0.28
Ubr4A2AN08 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Ubr4A2AN08 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Ubr4A2AN08 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC13.32□□□□□ -0.28
Ubr4A2AN08 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Ubr4A2AN08 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
Ubr4A2AN08 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ubr4A2AN08 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ubr4A2AN08 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
Ubr4A2AN08 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ubr4A2AN08 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ubr4A2AN08 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ubr4A2AN08 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ubr4A2AN08 Gm45102-201ENSMUST00000207427 857 ntBASIC13.3□□□□□ -0.28
Ubr4A2AN08 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Ubr4A2AN08 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubr4A2AN08 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubr4A2AN08 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Ubr4A2AN08 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ubr4A2AN08 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ubr4A2AN08 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ubr4A2AN08 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC13.28□□□□□ -0.28
Ubr4A2AN08 Gm14117-201ENSMUST00000122417 843 ntBASIC13.28□□□□□ -0.28
Ubr4A2AN08 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Ubr4A2AN08 Gm29257-201ENSMUST00000186115 639 ntBASIC13.27□□□□□ -0.29
Ubr4A2AN08 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC13.27□□□□□ -0.29
Ubr4A2AN08 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ubr4A2AN08 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
Ubr4A2AN08 Spcs1-207ENSMUST00000228767 1008 ntBASIC13.26□□□□□ -0.29
Ubr4A2AN08 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC13.26□□□□□ -0.29
Ubr4A2AN08 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ubr4A2AN08 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ubr4A2AN08 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ubr4A2AN08 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ubr4A2AN08 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ubr4A2AN08 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ubr4A2AN08 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ubr4A2AN08 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Ubr4A2AN08 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ubr4A2AN08 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
Ubr4A2AN08 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC13.24□□□□□ -0.29
Ubr4A2AN08 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ubr4A2AN08 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
Ubr4A2AN08 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ubr4A2AN08 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC13.23□□□□□ -0.29
Ubr4A2AN08 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ubr4A2AN08 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ubr4A2AN08 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ubr4A2AN08 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC13.22□□□□□ -0.29
Ubr4A2AN08 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC13.22□□□□□ -0.29
Ubr4A2AN08 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ubr4A2AN08 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ubr4A2AN08 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Ubr4A2AN08 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ubr4A2AN08 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC13.21□□□□□ -0.29
Ubr4A2AN08 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ubr4A2AN08 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ubr4A2AN08 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ubr4A2AN08 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ubr4A2AN08 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC13.21□□□□□ -0.3
Ubr4A2AN08 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms