Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
Cstf1Q99LC2 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
Cstf1Q99LC2 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC24.56■■□□□ 1.52
Cstf1Q99LC2 Gm30346-201ENSMUST00000218641 1699 ntBASIC24.56■■□□□ 1.52
Cstf1Q99LC2 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC24.55■■□□□ 1.52
Cstf1Q99LC2 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC24.55■■□□□ 1.52
Cstf1Q99LC2 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Cstf1Q99LC2 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Cstf1Q99LC2 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Cstf1Q99LC2 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC24.52■■□□□ 1.52
Cstf1Q99LC2 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Cstf1Q99LC2 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Cstf1Q99LC2 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
Cstf1Q99LC2 Gm6311-201ENSMUST00000073790 878 ntBASIC24.51■■□□□ 1.51
Cstf1Q99LC2 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
Cstf1Q99LC2 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC24.51■■□□□ 1.51
Cstf1Q99LC2 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Cstf1Q99LC2 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC24.5■■□□□ 1.51
Cstf1Q99LC2 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Cstf1Q99LC2 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC24.49■■□□□ 1.51
Cstf1Q99LC2 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
Cstf1Q99LC2 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC24.47■■□□□ 1.51
Cstf1Q99LC2 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC24.47■■□□□ 1.51
Cstf1Q99LC2 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Cstf1Q99LC2 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Cstf1Q99LC2 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Cstf1Q99LC2 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Cstf1Q99LC2 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC24.45■■□□□ 1.5
Cstf1Q99LC2 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
Cstf1Q99LC2 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Cstf1Q99LC2 AC131739.1-201ENSMUST00000221692 1245 ntBASIC24.44■■□□□ 1.5
Cstf1Q99LC2 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC24.43■■□□□ 1.5
Cstf1Q99LC2 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
Cstf1Q99LC2 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
Cstf1Q99LC2 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Cstf1Q99LC2 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.5
Cstf1Q99LC2 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
Cstf1Q99LC2 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Cstf1Q99LC2 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
Cstf1Q99LC2 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
Cstf1Q99LC2 AC167019.3-201ENSMUST00000228225 1266 ntBASIC24.38■■□□□ 1.49
Cstf1Q99LC2 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Cstf1Q99LC2 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Cstf1Q99LC2 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC24.37■■□□□ 1.49
Cstf1Q99LC2 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Cstf1Q99LC2 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Cstf1Q99LC2 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Cstf1Q99LC2 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Cstf1Q99LC2 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC24.35■■□□□ 1.49
Cstf1Q99LC2 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC24.34■■□□□ 1.49
Cstf1Q99LC2 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC24.34■■□□□ 1.49
Cstf1Q99LC2 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC24.34■■□□□ 1.49
Cstf1Q99LC2 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Cstf1Q99LC2 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
Cstf1Q99LC2 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC24.33■■□□□ 1.49
Cstf1Q99LC2 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC24.33■■□□□ 1.48
Cstf1Q99LC2 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC24.32■■□□□ 1.48
Cstf1Q99LC2 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Cstf1Q99LC2 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
Cstf1Q99LC2 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Cstf1Q99LC2 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Cstf1Q99LC2 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
Cstf1Q99LC2 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Cstf1Q99LC2 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Cstf1Q99LC2 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC24.29■■□□□ 1.48
Cstf1Q99LC2 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
Cstf1Q99LC2 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC24.27■■□□□ 1.48
Cstf1Q99LC2 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
Cstf1Q99LC2 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Cstf1Q99LC2 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Cstf1Q99LC2 Gm6345-201ENSMUST00000180378 1691 ntBASIC24.25■■□□□ 1.47
Cstf1Q99LC2 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC24.25■■□□□ 1.47
Cstf1Q99LC2 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC24.25■■□□□ 1.47
Cstf1Q99LC2 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
Cstf1Q99LC2 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC24.24■■□□□ 1.47
Cstf1Q99LC2 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Cstf1Q99LC2 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Cstf1Q99LC2 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Cstf1Q99LC2 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Cstf1Q99LC2 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Cstf1Q99LC2 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Cstf1Q99LC2 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
Cstf1Q99LC2 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
Cstf1Q99LC2 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Cstf1Q99LC2 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Cstf1Q99LC2 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Cstf1Q99LC2 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC24.2■■□□□ 1.46
Cstf1Q99LC2 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Cstf1Q99LC2 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Cstf1Q99LC2 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Cstf1Q99LC2 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Cstf1Q99LC2 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
Cstf1Q99LC2 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Cstf1Q99LC2 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC24.15■■□□□ 1.46
Cstf1Q99LC2 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Cstf1Q99LC2 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
Cstf1Q99LC2 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
Cstf1Q99LC2 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Cstf1Q99LC2 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Cstf1Q99LC2 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms