Protein–RNA interactions for Protein: Q5R1D2

Trav15-1-dv6-1, T cell receptor alpha variable 15-1-DV6-1 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav15-1-dv6-1Q5R1D2 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC18.78■□□□□ 0.6
Trav15-1-dv6-1Q5R1D2 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trav15-1-dv6-1Q5R1D2 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trav15-1-dv6-1Q5R1D2 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trav15-1-dv6-1Q5R1D2 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trav15-1-dv6-1Q5R1D2 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav15-1-dv6-1Q5R1D2 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trav15-1-dv6-1Q5R1D2 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trav15-1-dv6-1Q5R1D2 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC18.76■□□□□ 0.59
Trav15-1-dv6-1Q5R1D2 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Trav15-1-dv6-1Q5R1D2 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC18.74■□□□□ 0.59
Trav15-1-dv6-1Q5R1D2 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav15-1-dv6-1Q5R1D2 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav15-1-dv6-1Q5R1D2 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC18.73■□□□□ 0.59
Trav15-1-dv6-1Q5R1D2 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav15-1-dv6-1Q5R1D2 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC18.72■□□□□ 0.59
Trav15-1-dv6-1Q5R1D2 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
Trav15-1-dv6-1Q5R1D2 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav15-1-dv6-1Q5R1D2 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
Trav15-1-dv6-1Q5R1D2 Peli2-204ENSMUST00000226513 1320 ntBASIC18.72■□□□□ 0.59
Trav15-1-dv6-1Q5R1D2 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Trav15-1-dv6-1Q5R1D2 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Trav15-1-dv6-1Q5R1D2 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Trav15-1-dv6-1Q5R1D2 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Trav15-1-dv6-1Q5R1D2 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav15-1-dv6-1Q5R1D2 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav15-1-dv6-1Q5R1D2 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav15-1-dv6-1Q5R1D2 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav15-1-dv6-1Q5R1D2 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav15-1-dv6-1Q5R1D2 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav15-1-dv6-1Q5R1D2 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav15-1-dv6-1Q5R1D2 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trav15-1-dv6-1Q5R1D2 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trav15-1-dv6-1Q5R1D2 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Trav15-1-dv6-1Q5R1D2 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
Trav15-1-dv6-1Q5R1D2 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC18.66■□□□□ 0.58
Trav15-1-dv6-1Q5R1D2 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav15-1-dv6-1Q5R1D2 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav15-1-dv6-1Q5R1D2 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trav15-1-dv6-1Q5R1D2 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Trav15-1-dv6-1Q5R1D2 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trav15-1-dv6-1Q5R1D2 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav15-1-dv6-1Q5R1D2 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Trav15-1-dv6-1Q5R1D2 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Trav15-1-dv6-1Q5R1D2 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav15-1-dv6-1Q5R1D2 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav15-1-dv6-1Q5R1D2 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav15-1-dv6-1Q5R1D2 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav15-1-dv6-1Q5R1D2 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
Trav15-1-dv6-1Q5R1D2 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav15-1-dv6-1Q5R1D2 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav15-1-dv6-1Q5R1D2 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav15-1-dv6-1Q5R1D2 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trav15-1-dv6-1Q5R1D2 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav15-1-dv6-1Q5R1D2 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Trav15-1-dv6-1Q5R1D2 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Trav15-1-dv6-1Q5R1D2 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
Trav15-1-dv6-1Q5R1D2 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trav15-1-dv6-1Q5R1D2 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
Trav15-1-dv6-1Q5R1D2 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trav15-1-dv6-1Q5R1D2 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav15-1-dv6-1Q5R1D2 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav15-1-dv6-1Q5R1D2 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav15-1-dv6-1Q5R1D2 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav15-1-dv6-1Q5R1D2 Pcf11-205ENSMUST00000208255 1720 ntBASIC18.55■□□□□ 0.56
Trav15-1-dv6-1Q5R1D2 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trav15-1-dv6-1Q5R1D2 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav15-1-dv6-1Q5R1D2 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav15-1-dv6-1Q5R1D2 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav15-1-dv6-1Q5R1D2 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav15-1-dv6-1Q5R1D2 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Trav15-1-dv6-1Q5R1D2 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav15-1-dv6-1Q5R1D2 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav15-1-dv6-1Q5R1D2 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trav15-1-dv6-1Q5R1D2 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav15-1-dv6-1Q5R1D2 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC18.52■□□□□ 0.56
Trav15-1-dv6-1Q5R1D2 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav15-1-dv6-1Q5R1D2 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trav15-1-dv6-1Q5R1D2 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC18.51■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC18.47■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 12.2 ms