Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC32.23■■■□□ 2.75
Ddb1Q3U1J4 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
Ddb1Q3U1J4 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
Ddb1Q3U1J4 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
Ddb1Q3U1J4 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
Ddb1Q3U1J4 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
Ddb1Q3U1J4 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
Ddb1Q3U1J4 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC32.17■■■□□ 2.74
Ddb1Q3U1J4 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC32.14■■■□□ 2.74
Ddb1Q3U1J4 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC32.14■■■□□ 2.74
Ddb1Q3U1J4 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC32.11■■■□□ 2.73
Ddb1Q3U1J4 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Ddb1Q3U1J4 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC32.1■■■□□ 2.73
Ddb1Q3U1J4 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC32.1■■■□□ 2.73
Ddb1Q3U1J4 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC32.08■■■□□ 2.73
Ddb1Q3U1J4 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
Ddb1Q3U1J4 AC131739.1-201ENSMUST00000221692 1245 ntBASIC32.08■■■□□ 2.73
Ddb1Q3U1J4 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
Ddb1Q3U1J4 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC32.06■■■□□ 2.72
Ddb1Q3U1J4 Gm6311-201ENSMUST00000073790 878 ntBASIC32.06■■■□□ 2.72
Ddb1Q3U1J4 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
Ddb1Q3U1J4 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
Ddb1Q3U1J4 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
Ddb1Q3U1J4 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC32.03■■■□□ 2.72
Ddb1Q3U1J4 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC32.01■■■□□ 2.72
Ddb1Q3U1J4 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Ddb1Q3U1J4 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Ddb1Q3U1J4 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
Ddb1Q3U1J4 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC31.98■■■□□ 2.71
Ddb1Q3U1J4 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC31.97■■■□□ 2.71
Ddb1Q3U1J4 AC167019.3-201ENSMUST00000228225 1266 ntBASIC31.97■■■□□ 2.71
Ddb1Q3U1J4 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
Ddb1Q3U1J4 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC31.96■■■□□ 2.71
Ddb1Q3U1J4 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC31.94■■■□□ 2.7
Ddb1Q3U1J4 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC31.94■■■□□ 2.7
Ddb1Q3U1J4 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Ddb1Q3U1J4 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
Ddb1Q3U1J4 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
Ddb1Q3U1J4 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Ddb1Q3U1J4 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC31.92■■■□□ 2.7
Ddb1Q3U1J4 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC31.92■■■□□ 2.7
Ddb1Q3U1J4 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
Ddb1Q3U1J4 Gm2415-204ENSMUST00000190235 2004 ntBASIC31.91■■■□□ 2.7
Ddb1Q3U1J4 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Ddb1Q3U1J4 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC31.89■■■□□ 2.7
Ddb1Q3U1J4 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Ddb1Q3U1J4 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC31.89■■■□□ 2.7
Ddb1Q3U1J4 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Ddb1Q3U1J4 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Ddb1Q3U1J4 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC31.88■■■□□ 2.69
Ddb1Q3U1J4 Gm6345-201ENSMUST00000180378 1691 ntBASIC31.88■■■□□ 2.69
Ddb1Q3U1J4 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Ddb1Q3U1J4 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
Ddb1Q3U1J4 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC31.85■■■□□ 2.69
Ddb1Q3U1J4 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
Ddb1Q3U1J4 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC31.84■■■□□ 2.69
Ddb1Q3U1J4 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC31.84■■■□□ 2.69
Ddb1Q3U1J4 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Ddb1Q3U1J4 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
Ddb1Q3U1J4 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
Ddb1Q3U1J4 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC31.8■■■□□ 2.68
Ddb1Q3U1J4 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC31.8■■■□□ 2.68
Ddb1Q3U1J4 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC31.8■■■□□ 2.68
Ddb1Q3U1J4 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
Ddb1Q3U1J4 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Ddb1Q3U1J4 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC31.78■■■□□ 2.68
Ddb1Q3U1J4 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC31.78■■■□□ 2.68
Ddb1Q3U1J4 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Ddb1Q3U1J4 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Ddb1Q3U1J4 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Ddb1Q3U1J4 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Ddb1Q3U1J4 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
Ddb1Q3U1J4 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
Ddb1Q3U1J4 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC31.72■■■□□ 2.67
Ddb1Q3U1J4 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
Ddb1Q3U1J4 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
Ddb1Q3U1J4 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
Ddb1Q3U1J4 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC31.69■■■□□ 2.66
Ddb1Q3U1J4 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC31.69■■■□□ 2.66
Ddb1Q3U1J4 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
Ddb1Q3U1J4 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC31.68■■■□□ 2.66
Ddb1Q3U1J4 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
Ddb1Q3U1J4 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
Ddb1Q3U1J4 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC31.68■■■□□ 2.66
Ddb1Q3U1J4 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC31.67■■■□□ 2.66
Ddb1Q3U1J4 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC31.67■■■□□ 2.66
Ddb1Q3U1J4 Particl-201ENSMUST00000205370 1560 ntBASIC31.66■■■□□ 2.66
Ddb1Q3U1J4 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
Ddb1Q3U1J4 Gm6658-202ENSMUST00000209493 1885 ntBASIC31.65■■■□□ 2.66
Ddb1Q3U1J4 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Ddb1Q3U1J4 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
Ddb1Q3U1J4 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
Ddb1Q3U1J4 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.65
Ddb1Q3U1J4 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
Ddb1Q3U1J4 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
Ddb1Q3U1J4 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC31.62■■■□□ 2.65
Ddb1Q3U1J4 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
Ddb1Q3U1J4 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
Ddb1Q3U1J4 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Ddb1Q3U1J4 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Retrieved 100 of 76,532 protein–RNA pairs in 14.5 ms