Protein–RNA interactions for Protein: A0A0B4J1K2

Trav9-4, T cell receptor alpha variable 9-4 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav9-4A0A0B4J1K2 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav9-4A0A0B4J1K2 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav9-4A0A0B4J1K2 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav9-4A0A0B4J1K2 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav9-4A0A0B4J1K2 Amer2-203ENSMUST00000225247 2662 ntBASIC18.26■□□□□ 0.51
Trav9-4A0A0B4J1K2 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Trav9-4A0A0B4J1K2 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC18.25■□□□□ 0.51
Trav9-4A0A0B4J1K2 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Trav9-4A0A0B4J1K2 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav9-4A0A0B4J1K2 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav9-4A0A0B4J1K2 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav9-4A0A0B4J1K2 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav9-4A0A0B4J1K2 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC18.23■□□□□ 0.51
Trav9-4A0A0B4J1K2 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav9-4A0A0B4J1K2 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav9-4A0A0B4J1K2 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trav9-4A0A0B4J1K2 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trav9-4A0A0B4J1K2 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Trav9-4A0A0B4J1K2 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav9-4A0A0B4J1K2 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC18.21■□□□□ 0.51
Trav9-4A0A0B4J1K2 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trav9-4A0A0B4J1K2 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav9-4A0A0B4J1K2 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav9-4A0A0B4J1K2 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav9-4A0A0B4J1K2 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Trav9-4A0A0B4J1K2 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trav9-4A0A0B4J1K2 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC18.2■□□□□ 0.5
Trav9-4A0A0B4J1K2 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Trav9-4A0A0B4J1K2 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trav9-4A0A0B4J1K2 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trav9-4A0A0B4J1K2 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC18.2■□□□□ 0.5
Trav9-4A0A0B4J1K2 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav9-4A0A0B4J1K2 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav9-4A0A0B4J1K2 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trav9-4A0A0B4J1K2 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Trav9-4A0A0B4J1K2 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trav9-4A0A0B4J1K2 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trav9-4A0A0B4J1K2 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC18.15■□□□□ 0.5
Trav9-4A0A0B4J1K2 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trav9-4A0A0B4J1K2 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trav9-4A0A0B4J1K2 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC18.14■□□□□ 0.5
Trav9-4A0A0B4J1K2 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav9-4A0A0B4J1K2 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav9-4A0A0B4J1K2 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav9-4A0A0B4J1K2 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Trav9-4A0A0B4J1K2 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav9-4A0A0B4J1K2 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
Trav9-4A0A0B4J1K2 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav9-4A0A0B4J1K2 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trav9-4A0A0B4J1K2 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav9-4A0A0B4J1K2 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trav9-4A0A0B4J1K2 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC18.12■□□□□ 0.49
Trav9-4A0A0B4J1K2 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trav9-4A0A0B4J1K2 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav9-4A0A0B4J1K2 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Trav9-4A0A0B4J1K2 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trav9-4A0A0B4J1K2 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Trav9-4A0A0B4J1K2 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC18.1■□□□□ 0.49
Trav9-4A0A0B4J1K2 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav9-4A0A0B4J1K2 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC18.1■□□□□ 0.49
Trav9-4A0A0B4J1K2 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trav9-4A0A0B4J1K2 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trav9-4A0A0B4J1K2 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Trav9-4A0A0B4J1K2 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trav9-4A0A0B4J1K2 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trav9-4A0A0B4J1K2 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Trav9-4A0A0B4J1K2 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trav9-4A0A0B4J1K2 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trav9-4A0A0B4J1K2 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trav9-4A0A0B4J1K2 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC18.06■□□□□ 0.48
Trav9-4A0A0B4J1K2 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trav9-4A0A0B4J1K2 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trav9-4A0A0B4J1K2 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC18.05■□□□□ 0.48
Trav9-4A0A0B4J1K2 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Trav9-4A0A0B4J1K2 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Trav9-4A0A0B4J1K2 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trav9-4A0A0B4J1K2 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
Trav9-4A0A0B4J1K2 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC18.04■□□□□ 0.48
Trav9-4A0A0B4J1K2 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trav9-4A0A0B4J1K2 Pcf11-205ENSMUST00000208255 1720 ntBASIC18.02■□□□□ 0.48
Trav9-4A0A0B4J1K2 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC18.02■□□□□ 0.48
Trav9-4A0A0B4J1K2 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC18.02■□□□□ 0.47
Trav9-4A0A0B4J1K2 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trav9-4A0A0B4J1K2 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trav9-4A0A0B4J1K2 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
Trav9-4A0A0B4J1K2 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trav9-4A0A0B4J1K2 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trav9-4A0A0B4J1K2 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Trav9-4A0A0B4J1K2 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav9-4A0A0B4J1K2 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC17.97■□□□□ 0.47
Trav9-4A0A0B4J1K2 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav9-4A0A0B4J1K2 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav9-4A0A0B4J1K2 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trav9-4A0A0B4J1K2 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trav9-4A0A0B4J1K2 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Trav9-4A0A0B4J1K2 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trav9-4A0A0B4J1K2 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trav9-4A0A0B4J1K2 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Trav9-4A0A0B4J1K2 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trav9-4A0A0B4J1K2 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms