Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trbv1A0A0B4J1G7 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trbv1A0A0B4J1G7 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trbv1A0A0B4J1G7 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trbv1A0A0B4J1G7 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trbv1A0A0B4J1G7 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trbv1A0A0B4J1G7 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trbv1A0A0B4J1G7 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trbv1A0A0B4J1G7 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Trbv1A0A0B4J1G7 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trbv1A0A0B4J1G7 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trbv1A0A0B4J1G7 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trbv1A0A0B4J1G7 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
Trbv1A0A0B4J1G7 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Trbv1A0A0B4J1G7 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trbv1A0A0B4J1G7 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trbv1A0A0B4J1G7 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trbv1A0A0B4J1G7 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trbv1A0A0B4J1G7 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trbv1A0A0B4J1G7 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC18.74■□□□□ 0.59
Trbv1A0A0B4J1G7 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
Trbv1A0A0B4J1G7 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
Trbv1A0A0B4J1G7 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trbv1A0A0B4J1G7 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv1A0A0B4J1G7 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv1A0A0B4J1G7 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv1A0A0B4J1G7 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv1A0A0B4J1G7 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv1A0A0B4J1G7 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv1A0A0B4J1G7 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trbv1A0A0B4J1G7 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Trbv1A0A0B4J1G7 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trbv1A0A0B4J1G7 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trbv1A0A0B4J1G7 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Trbv1A0A0B4J1G7 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Trbv1A0A0B4J1G7 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC18.71■□□□□ 0.59
Trbv1A0A0B4J1G7 Gm16148-201ENSMUST00000119653 893 ntBASIC18.71■□□□□ 0.59
Trbv1A0A0B4J1G7 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Trbv1A0A0B4J1G7 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC18.7■□□□□ 0.58
Trbv1A0A0B4J1G7 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv1A0A0B4J1G7 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv1A0A0B4J1G7 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trbv1A0A0B4J1G7 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Trbv1A0A0B4J1G7 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trbv1A0A0B4J1G7 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC18.68■□□□□ 0.58
Trbv1A0A0B4J1G7 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trbv1A0A0B4J1G7 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC18.68■□□□□ 0.58
Trbv1A0A0B4J1G7 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC18.68■□□□□ 0.58
Trbv1A0A0B4J1G7 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trbv1A0A0B4J1G7 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC18.68■□□□□ 0.58
Trbv1A0A0B4J1G7 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trbv1A0A0B4J1G7 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trbv1A0A0B4J1G7 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trbv1A0A0B4J1G7 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Trbv1A0A0B4J1G7 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trbv1A0A0B4J1G7 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv1A0A0B4J1G7 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv1A0A0B4J1G7 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv1A0A0B4J1G7 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv1A0A0B4J1G7 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Trbv1A0A0B4J1G7 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC18.65■□□□□ 0.58
Trbv1A0A0B4J1G7 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Trbv1A0A0B4J1G7 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv1A0A0B4J1G7 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv1A0A0B4J1G7 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv1A0A0B4J1G7 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv1A0A0B4J1G7 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv1A0A0B4J1G7 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trbv1A0A0B4J1G7 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trbv1A0A0B4J1G7 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Trbv1A0A0B4J1G7 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trbv1A0A0B4J1G7 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trbv1A0A0B4J1G7 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trbv1A0A0B4J1G7 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv1A0A0B4J1G7 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv1A0A0B4J1G7 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv1A0A0B4J1G7 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv1A0A0B4J1G7 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv1A0A0B4J1G7 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv1A0A0B4J1G7 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv1A0A0B4J1G7 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv1A0A0B4J1G7 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trbv1A0A0B4J1G7 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trbv1A0A0B4J1G7 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Trbv1A0A0B4J1G7 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trbv1A0A0B4J1G7 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trbv1A0A0B4J1G7 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Trbv1A0A0B4J1G7 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Trbv1A0A0B4J1G7 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trbv1A0A0B4J1G7 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trbv1A0A0B4J1G7 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trbv1A0A0B4J1G7 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trbv1A0A0B4J1G7 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trbv1A0A0B4J1G7 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Trbv1A0A0B4J1G7 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trbv1A0A0B4J1G7 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trbv1A0A0B4J1G7 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trbv1A0A0B4J1G7 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trbv1A0A0B4J1G7 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Trbv1A0A0B4J1G7 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC18.54■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 16.1 ms