Protein–RNA interactions for Protein: A0A0A6YYE2

Trbv3, T cell receptor beta, variable 3 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv3A0A0A6YYE2 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trbv3A0A0A6YYE2 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Trbv3A0A0A6YYE2 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv3A0A0A6YYE2 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv3A0A0A6YYE2 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trbv3A0A0A6YYE2 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trbv3A0A0A6YYE2 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Trbv3A0A0A6YYE2 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Trbv3A0A0A6YYE2 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv3A0A0A6YYE2 AC166822.3-201ENSMUST00000227394 661 ntBASIC18.7■□□□□ 0.58
Trbv3A0A0A6YYE2 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv3A0A0A6YYE2 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv3A0A0A6YYE2 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv3A0A0A6YYE2 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv3A0A0A6YYE2 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv3A0A0A6YYE2 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv3A0A0A6YYE2 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Trbv3A0A0A6YYE2 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trbv3A0A0A6YYE2 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trbv3A0A0A6YYE2 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trbv3A0A0A6YYE2 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trbv3A0A0A6YYE2 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trbv3A0A0A6YYE2 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trbv3A0A0A6YYE2 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Trbv3A0A0A6YYE2 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trbv3A0A0A6YYE2 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Trbv3A0A0A6YYE2 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv3A0A0A6YYE2 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv3A0A0A6YYE2 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv3A0A0A6YYE2 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trbv3A0A0A6YYE2 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trbv3A0A0A6YYE2 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Trbv3A0A0A6YYE2 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv3A0A0A6YYE2 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv3A0A0A6YYE2 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trbv3A0A0A6YYE2 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trbv3A0A0A6YYE2 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trbv3A0A0A6YYE2 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trbv3A0A0A6YYE2 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC18.61■□□□□ 0.57
Trbv3A0A0A6YYE2 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Trbv3A0A0A6YYE2 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trbv3A0A0A6YYE2 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC18.61■□□□□ 0.57
Trbv3A0A0A6YYE2 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv3A0A0A6YYE2 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv3A0A0A6YYE2 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv3A0A0A6YYE2 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv3A0A0A6YYE2 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trbv3A0A0A6YYE2 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trbv3A0A0A6YYE2 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trbv3A0A0A6YYE2 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trbv3A0A0A6YYE2 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trbv3A0A0A6YYE2 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trbv3A0A0A6YYE2 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Trbv3A0A0A6YYE2 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Trbv3A0A0A6YYE2 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trbv3A0A0A6YYE2 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trbv3A0A0A6YYE2 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trbv3A0A0A6YYE2 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trbv3A0A0A6YYE2 Pcf11-205ENSMUST00000208255 1720 ntBASIC18.54■□□□□ 0.56
Trbv3A0A0A6YYE2 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trbv3A0A0A6YYE2 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC18.54■□□□□ 0.56
Trbv3A0A0A6YYE2 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trbv3A0A0A6YYE2 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trbv3A0A0A6YYE2 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv3A0A0A6YYE2 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trbv3A0A0A6YYE2 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trbv3A0A0A6YYE2 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trbv3A0A0A6YYE2 AC122428.3-201ENSMUST00000215551 2290 ntBASIC18.51■□□□□ 0.55
Trbv3A0A0A6YYE2 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv3A0A0A6YYE2 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv3A0A0A6YYE2 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv3A0A0A6YYE2 Il17rd-202ENSMUST00000223942 2186 ntBASIC18.49■□□□□ 0.55
Trbv3A0A0A6YYE2 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv3A0A0A6YYE2 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv3A0A0A6YYE2 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv3A0A0A6YYE2 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
Trbv3A0A0A6YYE2 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC18.48■□□□□ 0.55
Trbv3A0A0A6YYE2 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC18.48■□□□□ 0.55
Trbv3A0A0A6YYE2 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Trbv3A0A0A6YYE2 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Trbv3A0A0A6YYE2 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trbv3A0A0A6YYE2 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Trbv3A0A0A6YYE2 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Trbv3A0A0A6YYE2 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Trbv3A0A0A6YYE2 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trbv3A0A0A6YYE2 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Trbv3A0A0A6YYE2 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trbv3A0A0A6YYE2 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Trbv3A0A0A6YYE2 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trbv3A0A0A6YYE2 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trbv3A0A0A6YYE2 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC18.44■□□□□ 0.54
Trbv3A0A0A6YYE2 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Trbv3A0A0A6YYE2 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC18.43■□□□□ 0.54
Trbv3A0A0A6YYE2 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trbv3A0A0A6YYE2 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Trbv3A0A0A6YYE2 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trbv3A0A0A6YYE2 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC18.42■□□□□ 0.54
Trbv3A0A0A6YYE2 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv3A0A0A6YYE2 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv3A0A0A6YYE2 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms