Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
Trim9Q8C7M3 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
Trim9Q8C7M3 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC27.64■■■□□ 2.01
Trim9Q8C7M3 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC27.64■■■□□ 2.01
Trim9Q8C7M3 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC27.63■■■□□ 2.01
Trim9Q8C7M3 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC27.62■■■□□ 2.01
Trim9Q8C7M3 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC27.61■■■□□ 2.01
Trim9Q8C7M3 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC27.61■■■□□ 2.01
Trim9Q8C7M3 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC27.6■■■□□ 2.01
Trim9Q8C7M3 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
Trim9Q8C7M3 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC27.59■■■□□ 2.01
Trim9Q8C7M3 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC27.59■■■□□ 2.01
Trim9Q8C7M3 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
Trim9Q8C7M3 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Trim9Q8C7M3 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Trim9Q8C7M3 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC27.57■■■□□ 2
Trim9Q8C7M3 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC27.56■■■□□ 2
Trim9Q8C7M3 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC27.56■■■□□ 2
Trim9Q8C7M3 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC27.56■■■□□ 2
Trim9Q8C7M3 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
Trim9Q8C7M3 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC27.55■■■□□ 2
Trim9Q8C7M3 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC27.55■■■□□ 2
Trim9Q8C7M3 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC27.53■■■□□ 2
Trim9Q8C7M3 Amer2-203ENSMUST00000225247 2662 ntBASIC27.53■■■□□ 2
Trim9Q8C7M3 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Trim9Q8C7M3 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC27.52■■■□□ 2
Trim9Q8C7M3 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
Trim9Q8C7M3 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC27.51■■□□□ 1.99
Trim9Q8C7M3 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
Trim9Q8C7M3 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC27.49■■□□□ 1.99
Trim9Q8C7M3 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC27.49■■□□□ 1.99
Trim9Q8C7M3 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC27.49■■□□□ 1.99
Trim9Q8C7M3 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC27.49■■□□□ 1.99
Trim9Q8C7M3 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
Trim9Q8C7M3 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Trim9Q8C7M3 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Trim9Q8C7M3 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Trim9Q8C7M3 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
Trim9Q8C7M3 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
Trim9Q8C7M3 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
Trim9Q8C7M3 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Trim9Q8C7M3 Zfp131-205ENSMUST00000223812 663 ntBASIC27.44■■□□□ 1.98
Trim9Q8C7M3 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
Trim9Q8C7M3 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
Trim9Q8C7M3 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
Trim9Q8C7M3 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
Trim9Q8C7M3 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC27.4■■□□□ 1.98
Trim9Q8C7M3 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC27.38■■□□□ 1.97
Trim9Q8C7M3 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC27.38■■□□□ 1.97
Trim9Q8C7M3 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
Trim9Q8C7M3 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC27.37■■□□□ 1.97
Trim9Q8C7M3 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Trim9Q8C7M3 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Trim9Q8C7M3 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
Trim9Q8C7M3 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Trim9Q8C7M3 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Trim9Q8C7M3 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC27.33■■□□□ 1.96
Trim9Q8C7M3 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Trim9Q8C7M3 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Trim9Q8C7M3 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
Trim9Q8C7M3 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Trim9Q8C7M3 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Trim9Q8C7M3 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC27.3■■□□□ 1.96
Trim9Q8C7M3 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC27.3■■□□□ 1.96
Trim9Q8C7M3 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC27.3■■□□□ 1.96
Trim9Q8C7M3 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC27.3■■□□□ 1.96
Trim9Q8C7M3 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
Trim9Q8C7M3 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC27.29■■□□□ 1.96
Trim9Q8C7M3 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC27.29■■□□□ 1.96
Trim9Q8C7M3 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC27.28■■□□□ 1.96
Trim9Q8C7M3 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
Trim9Q8C7M3 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Trim9Q8C7M3 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC27.25■■□□□ 1.95
Trim9Q8C7M3 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
Trim9Q8C7M3 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
Trim9Q8C7M3 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Trim9Q8C7M3 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
Trim9Q8C7M3 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC27.22■■□□□ 1.95
Trim9Q8C7M3 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC27.22■■□□□ 1.95
Trim9Q8C7M3 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
Trim9Q8C7M3 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Trim9Q8C7M3 Gm9397-201ENSMUST00000200125 605 ntBASIC27.21■■□□□ 1.95
Trim9Q8C7M3 Tdp2-203ENSMUST00000223804 1136 ntBASIC27.21■■□□□ 1.95
Trim9Q8C7M3 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
Trim9Q8C7M3 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
Trim9Q8C7M3 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC27.2■■□□□ 1.94
Trim9Q8C7M3 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC27.19■■□□□ 1.94
Trim9Q8C7M3 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
Trim9Q8C7M3 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
Trim9Q8C7M3 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC27.19■■□□□ 1.94
Trim9Q8C7M3 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC27.18■■□□□ 1.94
Trim9Q8C7M3 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Trim9Q8C7M3 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC27.16■■□□□ 1.94
Trim9Q8C7M3 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC27.16■■□□□ 1.94
Trim9Q8C7M3 Gm43863-201ENSMUST00000203822 1192 ntBASIC27.16■■□□□ 1.94
Trim9Q8C7M3 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC27.16■■□□□ 1.94
Trim9Q8C7M3 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Trim9Q8C7M3 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC27.15■■□□□ 1.94
Trim9Q8C7M3 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Trim9Q8C7M3 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms