Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC23.14■■□□□ 1.3
Rnf220Q6PDX6 Mipep-204ENSMUST00000225043 1548 ntBASIC23.14■■□□□ 1.3
Rnf220Q6PDX6 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
Rnf220Q6PDX6 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
Rnf220Q6PDX6 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Rnf220Q6PDX6 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Rnf220Q6PDX6 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
Rnf220Q6PDX6 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Rnf220Q6PDX6 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC23.1■■□□□ 1.29
Rnf220Q6PDX6 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC23.09■■□□□ 1.29
Rnf220Q6PDX6 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
Rnf220Q6PDX6 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Rnf220Q6PDX6 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Rnf220Q6PDX6 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Rnf220Q6PDX6 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Rnf220Q6PDX6 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Rnf220Q6PDX6 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
Rnf220Q6PDX6 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Rnf220Q6PDX6 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC23.06■■□□□ 1.28
Rnf220Q6PDX6 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Rnf220Q6PDX6 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Rnf220Q6PDX6 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Rnf220Q6PDX6 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Rnf220Q6PDX6 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
Rnf220Q6PDX6 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Rnf220Q6PDX6 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
Rnf220Q6PDX6 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Rnf220Q6PDX6 Gm17641-201ENSMUST00000166328 2350 ntBASIC23.01■■□□□ 1.27
Rnf220Q6PDX6 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Rnf220Q6PDX6 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Rnf220Q6PDX6 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
Rnf220Q6PDX6 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC23■■□□□ 1.27
Rnf220Q6PDX6 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
Rnf220Q6PDX6 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
Rnf220Q6PDX6 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC22.99■■□□□ 1.27
Rnf220Q6PDX6 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Rnf220Q6PDX6 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC22.98■■□□□ 1.27
Rnf220Q6PDX6 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Rnf220Q6PDX6 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Rnf220Q6PDX6 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
Rnf220Q6PDX6 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Rnf220Q6PDX6 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Rnf220Q6PDX6 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Rnf220Q6PDX6 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC22.94■■□□□ 1.26
Rnf220Q6PDX6 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC22.94■■□□□ 1.26
Rnf220Q6PDX6 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Rnf220Q6PDX6 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Rnf220Q6PDX6 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC22.91■■□□□ 1.26
Rnf220Q6PDX6 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Rnf220Q6PDX6 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
Rnf220Q6PDX6 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Rnf220Q6PDX6 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Rnf220Q6PDX6 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
Rnf220Q6PDX6 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Rnf220Q6PDX6 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Rnf220Q6PDX6 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC22.88■■□□□ 1.25
Rnf220Q6PDX6 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Rnf220Q6PDX6 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC22.88■■□□□ 1.25
Rnf220Q6PDX6 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC22.87■■□□□ 1.25
Rnf220Q6PDX6 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Rnf220Q6PDX6 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Rnf220Q6PDX6 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Rnf220Q6PDX6 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Rnf220Q6PDX6 Gm17082-201ENSMUST00000166043 1091 ntBASIC22.85■■□□□ 1.25
Rnf220Q6PDX6 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
Rnf220Q6PDX6 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC22.84■■□□□ 1.25
Rnf220Q6PDX6 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.25
Rnf220Q6PDX6 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC22.83■■□□□ 1.24
Rnf220Q6PDX6 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC22.82■■□□□ 1.24
Rnf220Q6PDX6 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Rnf220Q6PDX6 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
Rnf220Q6PDX6 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Rnf220Q6PDX6 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC22.81■■□□□ 1.24
Rnf220Q6PDX6 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
Rnf220Q6PDX6 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Rnf220Q6PDX6 AC166822.3-201ENSMUST00000227394 661 ntBASIC22.81■■□□□ 1.24
Rnf220Q6PDX6 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC22.81■■□□□ 1.24
Rnf220Q6PDX6 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC22.81■■□□□ 1.24
Rnf220Q6PDX6 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Rnf220Q6PDX6 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Rnf220Q6PDX6 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC22.8■■□□□ 1.24
Rnf220Q6PDX6 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC22.8■■□□□ 1.24
Rnf220Q6PDX6 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC22.8■■□□□ 1.24
Rnf220Q6PDX6 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Rnf220Q6PDX6 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC22.79■■□□□ 1.24
Rnf220Q6PDX6 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Rnf220Q6PDX6 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Rnf220Q6PDX6 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC22.78■■□□□ 1.24
Rnf220Q6PDX6 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC22.77■■□□□ 1.24
Rnf220Q6PDX6 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Rnf220Q6PDX6 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC22.77■■□□□ 1.24
Rnf220Q6PDX6 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Rnf220Q6PDX6 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Rnf220Q6PDX6 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC22.76■■□□□ 1.23
Rnf220Q6PDX6 Gm27322-201ENSMUST00000184007 104 ntBASIC22.76■■□□□ 1.23
Rnf220Q6PDX6 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC22.76■■□□□ 1.23
Rnf220Q6PDX6 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
Rnf220Q6PDX6 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Rnf220Q6PDX6 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Rnf220Q6PDX6 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms