Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC23.14■■□□□ 1.3
Rnf220Q6PDX6 Mipep-204ENSMUST00000225043 1548 ntBASIC23.14■■□□□ 1.3
Rnf220Q6PDX6 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
Rnf220Q6PDX6 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
Rnf220Q6PDX6 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Rnf220Q6PDX6 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Rnf220Q6PDX6 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
Rnf220Q6PDX6 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Rnf220Q6PDX6 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC23.1■■□□□ 1.29
Rnf220Q6PDX6 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC23.09■■□□□ 1.29
Rnf220Q6PDX6 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
Rnf220Q6PDX6 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Rnf220Q6PDX6 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Rnf220Q6PDX6 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Rnf220Q6PDX6 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Rnf220Q6PDX6 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Rnf220Q6PDX6 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
Rnf220Q6PDX6 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Rnf220Q6PDX6 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC23.06■■□□□ 1.28
Rnf220Q6PDX6 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Rnf220Q6PDX6 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Rnf220Q6PDX6 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Rnf220Q6PDX6 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Rnf220Q6PDX6 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
Rnf220Q6PDX6 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Rnf220Q6PDX6 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
Rnf220Q6PDX6 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Rnf220Q6PDX6 Gm17641-201ENSMUST00000166328 2350 ntBASIC23.01■■□□□ 1.27
Rnf220Q6PDX6 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Rnf220Q6PDX6 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Rnf220Q6PDX6 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
Rnf220Q6PDX6 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC23■■□□□ 1.27
Rnf220Q6PDX6 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
Rnf220Q6PDX6 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
Rnf220Q6PDX6 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC22.99■■□□□ 1.27
Rnf220Q6PDX6 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Rnf220Q6PDX6 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC22.98■■□□□ 1.27
Rnf220Q6PDX6 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Rnf220Q6PDX6 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Rnf220Q6PDX6 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
Rnf220Q6PDX6 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Rnf220Q6PDX6 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Rnf220Q6PDX6 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Rnf220Q6PDX6 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC22.94■■□□□ 1.26
Rnf220Q6PDX6 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC22.94■■□□□ 1.26
Rnf220Q6PDX6 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Rnf220Q6PDX6 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Rnf220Q6PDX6 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC22.91■■□□□ 1.26
Rnf220Q6PDX6 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Rnf220Q6PDX6 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
Rnf220Q6PDX6 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Rnf220Q6PDX6 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Rnf220Q6PDX6 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
Rnf220Q6PDX6 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Rnf220Q6PDX6 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Rnf220Q6PDX6 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC22.88■■□□□ 1.25
Rnf220Q6PDX6 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Rnf220Q6PDX6 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC22.88■■□□□ 1.25
Rnf220Q6PDX6 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC22.87■■□□□ 1.25
Rnf220Q6PDX6 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Rnf220Q6PDX6 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Rnf220Q6PDX6 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Rnf220Q6PDX6 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Rnf220Q6PDX6 Gm17082-201ENSMUST00000166043 1091 ntBASIC22.85■■□□□ 1.25
Rnf220Q6PDX6 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
Rnf220Q6PDX6 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC22.84■■□□□ 1.25
Rnf220Q6PDX6 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.25
Rnf220Q6PDX6 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC22.83■■□□□ 1.24
Rnf220Q6PDX6 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC22.82■■□□□ 1.24
Rnf220Q6PDX6 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Rnf220Q6PDX6 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
Rnf220Q6PDX6 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Rnf220Q6PDX6 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC22.81■■□□□ 1.24
Rnf220Q6PDX6 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
Rnf220Q6PDX6 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Rnf220Q6PDX6 AC166822.3-201ENSMUST00000227394 661 ntBASIC22.81■■□□□ 1.24
Rnf220Q6PDX6 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC22.81■■□□□ 1.24
Rnf220Q6PDX6 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC22.81■■□□□ 1.24
Rnf220Q6PDX6 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Rnf220Q6PDX6 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Rnf220Q6PDX6 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC22.8■■□□□ 1.24
Rnf220Q6PDX6 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC22.8■■□□□ 1.24
Rnf220Q6PDX6 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC22.8■■□□□ 1.24
Rnf220Q6PDX6 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Rnf220Q6PDX6 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC22.79■■□□□ 1.24
Rnf220Q6PDX6 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Rnf220Q6PDX6 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Rnf220Q6PDX6 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC22.78■■□□□ 1.24
Rnf220Q6PDX6 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC22.77■■□□□ 1.24
Rnf220Q6PDX6 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Rnf220Q6PDX6 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC22.77■■□□□ 1.24
Rnf220Q6PDX6 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Rnf220Q6PDX6 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Rnf220Q6PDX6 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC22.76■■□□□ 1.23
Rnf220Q6PDX6 Gm27322-201ENSMUST00000184007 104 ntBASIC22.76■■□□□ 1.23
Rnf220Q6PDX6 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC22.76■■□□□ 1.23
Rnf220Q6PDX6 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
Rnf220Q6PDX6 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Rnf220Q6PDX6 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Rnf220Q6PDX6 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms