Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Gm30346-201ENSMUST00000218641 1699 ntBASIC22.17■■□□□ 1.14
Rfx3P48381 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Rfx3P48381 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
Rfx3P48381 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Rfx3P48381 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC22.16■■□□□ 1.14
Rfx3P48381 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Rfx3P48381 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Rfx3P48381 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Rfx3P48381 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Rfx3P48381 Gm16148-201ENSMUST00000119653 893 ntBASIC22.14■■□□□ 1.13
Rfx3P48381 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
Rfx3P48381 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC22.12■■□□□ 1.13
Rfx3P48381 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC22.12■■□□□ 1.13
Rfx3P48381 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Rfx3P48381 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Rfx3P48381 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Rfx3P48381 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Rfx3P48381 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC22.1■■□□□ 1.13
Rfx3P48381 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Rfx3P48381 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Rfx3P48381 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Rfx3P48381 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Rfx3P48381 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
Rfx3P48381 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC22.08■■□□□ 1.13
Rfx3P48381 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Rfx3P48381 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Rfx3P48381 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Rfx3P48381 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
Rfx3P48381 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Rfx3P48381 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
Rfx3P48381 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Rfx3P48381 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Rfx3P48381 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Rfx3P48381 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Rfx3P48381 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Rfx3P48381 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC22.03■■□□□ 1.12
Rfx3P48381 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Rfx3P48381 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Rfx3P48381 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Rfx3P48381 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Rfx3P48381 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC22■■□□□ 1.11
Rfx3P48381 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Rfx3P48381 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Rfx3P48381 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
Rfx3P48381 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Rfx3P48381 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Rfx3P48381 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Rfx3P48381 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Rfx3P48381 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
Rfx3P48381 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC21.95■■□□□ 1.1
Rfx3P48381 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Rfx3P48381 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC21.94■■□□□ 1.1
Rfx3P48381 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
Rfx3P48381 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC21.94■■□□□ 1.1
Rfx3P48381 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Rfx3P48381 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Rfx3P48381 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC21.93■■□□□ 1.1
Rfx3P48381 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
Rfx3P48381 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Rfx3P48381 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Rfx3P48381 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Rfx3P48381 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Rfx3P48381 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Rfx3P48381 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Rfx3P48381 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC21.9■■□□□ 1.1
Rfx3P48381 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Rfx3P48381 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Rfx3P48381 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
Rfx3P48381 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Rfx3P48381 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC21.87■■□□□ 1.09
Rfx3P48381 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Rfx3P48381 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Rfx3P48381 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Rfx3P48381 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Rfx3P48381 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Rfx3P48381 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
Rfx3P48381 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Rfx3P48381 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC21.84■■□□□ 1.09
Rfx3P48381 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Rfx3P48381 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.09
Rfx3P48381 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Rfx3P48381 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Rfx3P48381 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
Rfx3P48381 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Rfx3P48381 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Rfx3P48381 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
Rfx3P48381 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Rfx3P48381 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Rfx3P48381 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Rfx3P48381 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Rfx3P48381 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Rfx3P48381 AC153890.1-201ENSMUST00000220021 2469 ntBASIC21.8■■□□□ 1.08
Rfx3P48381 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC21.79■■□□□ 1.08
Rfx3P48381 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Rfx3P48381 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Rfx3P48381 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Rfx3P48381 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Rfx3P48381 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Rfx3P48381 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Rfx3P48381 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms