Protein–RNA interactions for Protein: P04441

Cd74, H-2 class II histocompatibility antigen gamma chain, mousemouse

Predictions only

Length 279 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd74P04441 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cd74P04441 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cd74P04441 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cd74P04441 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Cd74P04441 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cd74P04441 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cd74P04441 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Cd74P04441 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cd74P04441 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Cd74P04441 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cd74P04441 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cd74P04441 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cd74P04441 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cd74P04441 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Cd74P04441 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cd74P04441 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Cd74P04441 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Cd74P04441 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cd74P04441 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC20.4■□□□□ 0.86
Cd74P04441 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
Cd74P04441 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cd74P04441 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
Cd74P04441 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC20.4■□□□□ 0.86
Cd74P04441 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Cd74P04441 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cd74P04441 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cd74P04441 Gm43445-201ENSMUST00000198564 2091 ntBASIC20.39■□□□□ 0.86
Cd74P04441 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Cd74P04441 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
Cd74P04441 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cd74P04441 Gm24970-201ENSMUST00000175582 82 ntBASIC20.38■□□□□ 0.85
Cd74P04441 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC20.38■□□□□ 0.85
Cd74P04441 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Cd74P04441 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Cd74P04441 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Cd74P04441 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cd74P04441 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cd74P04441 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Cd74P04441 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC20.37■□□□□ 0.85
Cd74P04441 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cd74P04441 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Cd74P04441 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cd74P04441 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cd74P04441 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cd74P04441 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cd74P04441 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC20.33■□□□□ 0.85
Cd74P04441 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Cd74P04441 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Cd74P04441 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Cd74P04441 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Cd74P04441 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Cd74P04441 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Cd74P04441 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Cd74P04441 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC20.27■□□□□ 0.84
Cd74P04441 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC20.27■□□□□ 0.84
Cd74P04441 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC20.26■□□□□ 0.83
Cd74P04441 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cd74P04441 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Cd74P04441 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cd74P04441 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cd74P04441 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cd74P04441 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Cd74P04441 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cd74P04441 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Cd74P04441 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cd74P04441 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Cd74P04441 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Cd74P04441 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Cd74P04441 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC20.21■□□□□ 0.83
Cd74P04441 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cd74P04441 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Cd74P04441 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Cd74P04441 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cd74P04441 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cd74P04441 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cd74P04441 Gm43863-201ENSMUST00000203822 1192 ntBASIC20.18■□□□□ 0.82
Cd74P04441 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cd74P04441 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cd74P04441 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cd74P04441 Fezf2-202ENSMUST00000224023 1917 ntBASIC20.17■□□□□ 0.82
Cd74P04441 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cd74P04441 Amer2-203ENSMUST00000225247 2662 ntBASIC20.17■□□□□ 0.82
Cd74P04441 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cd74P04441 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cd74P04441 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Cd74P04441 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cd74P04441 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cd74P04441 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Cd74P04441 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cd74P04441 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC20.14■□□□□ 0.81
Cd74P04441 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cd74P04441 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
Cd74P04441 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Cd74P04441 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cd74P04441 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cd74P04441 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Cd74P04441 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cd74P04441 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC20.11■□□□□ 0.81
Cd74P04441 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC20.11■□□□□ 0.81
Cd74P04441 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms