Protein–RNA interactions for Protein: A0A0B4J1K1

Trav4-3, T cell receptor alpha variable 4-3 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4-3A0A0B4J1K1 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Trav4-3A0A0B4J1K1 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trav4-3A0A0B4J1K1 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trav4-3A0A0B4J1K1 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trav4-3A0A0B4J1K1 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trav4-3A0A0B4J1K1 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Trav4-3A0A0B4J1K1 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC16.8■□□□□ 0.28
Trav4-3A0A0B4J1K1 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC16.8■□□□□ 0.28
Trav4-3A0A0B4J1K1 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trav4-3A0A0B4J1K1 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Trav4-3A0A0B4J1K1 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trav4-3A0A0B4J1K1 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trav4-3A0A0B4J1K1 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trav4-3A0A0B4J1K1 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trav4-3A0A0B4J1K1 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC16.78■□□□□ 0.28
Trav4-3A0A0B4J1K1 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trav4-3A0A0B4J1K1 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trav4-3A0A0B4J1K1 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
Trav4-3A0A0B4J1K1 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Trav4-3A0A0B4J1K1 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trav4-3A0A0B4J1K1 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trav4-3A0A0B4J1K1 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trav4-3A0A0B4J1K1 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Trav4-3A0A0B4J1K1 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC16.76■□□□□ 0.27
Trav4-3A0A0B4J1K1 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trav4-3A0A0B4J1K1 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trav4-3A0A0B4J1K1 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trav4-3A0A0B4J1K1 Gm25238-201ENSMUST00000174914 89 ntBASIC16.75■□□□□ 0.27
Trav4-3A0A0B4J1K1 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Trav4-3A0A0B4J1K1 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Trav4-3A0A0B4J1K1 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav4-3A0A0B4J1K1 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav4-3A0A0B4J1K1 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav4-3A0A0B4J1K1 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trav4-3A0A0B4J1K1 Rab21-202ENSMUST00000218831 843 ntBASIC16.73■□□□□ 0.27
Trav4-3A0A0B4J1K1 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC16.73■□□□□ 0.27
Trav4-3A0A0B4J1K1 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav4-3A0A0B4J1K1 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav4-3A0A0B4J1K1 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trav4-3A0A0B4J1K1 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trav4-3A0A0B4J1K1 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trav4-3A0A0B4J1K1 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
Trav4-3A0A0B4J1K1 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trav4-3A0A0B4J1K1 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trav4-3A0A0B4J1K1 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC16.7■□□□□ 0.26
Trav4-3A0A0B4J1K1 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trav4-3A0A0B4J1K1 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trav4-3A0A0B4J1K1 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trav4-3A0A0B4J1K1 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trav4-3A0A0B4J1K1 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Trav4-3A0A0B4J1K1 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC16.67■□□□□ 0.26
Trav4-3A0A0B4J1K1 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trav4-3A0A0B4J1K1 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Trav4-3A0A0B4J1K1 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Trav4-3A0A0B4J1K1 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Trav4-3A0A0B4J1K1 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Trav4-3A0A0B4J1K1 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Trav4-3A0A0B4J1K1 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trav4-3A0A0B4J1K1 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trav4-3A0A0B4J1K1 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trav4-3A0A0B4J1K1 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trav4-3A0A0B4J1K1 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trav4-3A0A0B4J1K1 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trav4-3A0A0B4J1K1 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC16.63■□□□□ 0.25
Trav4-3A0A0B4J1K1 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trav4-3A0A0B4J1K1 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
Trav4-3A0A0B4J1K1 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trav4-3A0A0B4J1K1 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trav4-3A0A0B4J1K1 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trav4-3A0A0B4J1K1 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trav4-3A0A0B4J1K1 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trav4-3A0A0B4J1K1 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trav4-3A0A0B4J1K1 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
Trav4-3A0A0B4J1K1 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Trav4-3A0A0B4J1K1 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trav4-3A0A0B4J1K1 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC16.61■□□□□ 0.25
Trav4-3A0A0B4J1K1 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Trav4-3A0A0B4J1K1 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trav4-3A0A0B4J1K1 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trav4-3A0A0B4J1K1 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trav4-3A0A0B4J1K1 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Trav4-3A0A0B4J1K1 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC16.6■□□□□ 0.25
Trav4-3A0A0B4J1K1 Gm30346-201ENSMUST00000218641 1699 ntBASIC16.6■□□□□ 0.25
Trav4-3A0A0B4J1K1 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav4-3A0A0B4J1K1 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Trav4-3A0A0B4J1K1 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav4-3A0A0B4J1K1 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav4-3A0A0B4J1K1 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav4-3A0A0B4J1K1 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Trav4-3A0A0B4J1K1 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trav4-3A0A0B4J1K1 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC16.58■□□□□ 0.24
Trav4-3A0A0B4J1K1 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC16.58■□□□□ 0.24
Trav4-3A0A0B4J1K1 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trav4-3A0A0B4J1K1 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav4-3A0A0B4J1K1 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav4-3A0A0B4J1K1 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Trav4-3A0A0B4J1K1 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav4-3A0A0B4J1K1 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC16.56■□□□□ 0.24
Trav4-3A0A0B4J1K1 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Trav4-3A0A0B4J1K1 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms