Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Sh3rf1Q69ZI1 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Sh3rf1Q69ZI1 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Sh3rf1Q69ZI1 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Sh3rf1Q69ZI1 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC18.75■□□□□ 0.59
Sh3rf1Q69ZI1 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC18.75■□□□□ 0.59
Sh3rf1Q69ZI1 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Sh3rf1Q69ZI1 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Sh3rf1Q69ZI1 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
Sh3rf1Q69ZI1 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Sh3rf1Q69ZI1 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Sh3rf1Q69ZI1 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Sh3rf1Q69ZI1 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
Sh3rf1Q69ZI1 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Sh3rf1Q69ZI1 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Sh3rf1Q69ZI1 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Sh3rf1Q69ZI1 Gm15853-202ENSMUST00000195518 2041 ntBASIC18.74■□□□□ 0.59
Sh3rf1Q69ZI1 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Sh3rf1Q69ZI1 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Sh3rf1Q69ZI1 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC18.74■□□□□ 0.59
Sh3rf1Q69ZI1 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
Sh3rf1Q69ZI1 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC18.74■□□□□ 0.59
Sh3rf1Q69ZI1 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Sh3rf1Q69ZI1 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Sh3rf1Q69ZI1 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Sh3rf1Q69ZI1 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Sh3rf1Q69ZI1 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Sh3rf1Q69ZI1 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Sh3rf1Q69ZI1 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Sh3rf1Q69ZI1 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Sh3rf1Q69ZI1 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Sh3rf1Q69ZI1 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC18.73■□□□□ 0.59
Sh3rf1Q69ZI1 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Sh3rf1Q69ZI1 Gm10571-201ENSMUST00000097869 1638 ntBASIC18.73■□□□□ 0.59
Sh3rf1Q69ZI1 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Sh3rf1Q69ZI1 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Sh3rf1Q69ZI1 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Sh3rf1Q69ZI1 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC18.72■□□□□ 0.59
Sh3rf1Q69ZI1 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sh3rf1Q69ZI1 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Sh3rf1Q69ZI1 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sh3rf1Q69ZI1 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sh3rf1Q69ZI1 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
Sh3rf1Q69ZI1 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sh3rf1Q69ZI1 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sh3rf1Q69ZI1 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sh3rf1Q69ZI1 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sh3rf1Q69ZI1 Gm37811-201ENSMUST00000192416 2601 ntBASIC18.72■□□□□ 0.59
Sh3rf1Q69ZI1 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sh3rf1Q69ZI1 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sh3rf1Q69ZI1 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sh3rf1Q69ZI1 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sh3rf1Q69ZI1 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sh3rf1Q69ZI1 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sh3rf1Q69ZI1 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sh3rf1Q69ZI1 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
Sh3rf1Q69ZI1 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Sh3rf1Q69ZI1 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sh3rf1Q69ZI1 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sh3rf1Q69ZI1 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sh3rf1Q69ZI1 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sh3rf1Q69ZI1 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Sh3rf1Q69ZI1 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sh3rf1Q69ZI1 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Sh3rf1Q69ZI1 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Sh3rf1Q69ZI1 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC18.7■□□□□ 0.58
Sh3rf1Q69ZI1 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Sh3rf1Q69ZI1 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sh3rf1Q69ZI1 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC18.7■□□□□ 0.58
Sh3rf1Q69ZI1 AC123834.2-201ENSMUST00000224038 2340 ntBASIC18.7■□□□□ 0.58
Sh3rf1Q69ZI1 AC112142.1-201ENSMUST00000228796 918 ntBASIC18.7■□□□□ 0.58
Sh3rf1Q69ZI1 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sh3rf1Q69ZI1 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sh3rf1Q69ZI1 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sh3rf1Q69ZI1 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Sh3rf1Q69ZI1 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Sh3rf1Q69ZI1 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sh3rf1Q69ZI1 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Sh3rf1Q69ZI1 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sh3rf1Q69ZI1 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sh3rf1Q69ZI1 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC18.69■□□□□ 0.58
Sh3rf1Q69ZI1 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sh3rf1Q69ZI1 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Sh3rf1Q69ZI1 Gm42911-201ENSMUST00000199360 1630 ntBASIC18.69■□□□□ 0.58
Sh3rf1Q69ZI1 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sh3rf1Q69ZI1 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sh3rf1Q69ZI1 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sh3rf1Q69ZI1 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Sh3rf1Q69ZI1 Gm42922-201ENSMUST00000195887 2078 ntBASIC18.69■□□□□ 0.58
Sh3rf1Q69ZI1 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sh3rf1Q69ZI1 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Sh3rf1Q69ZI1 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sh3rf1Q69ZI1 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sh3rf1Q69ZI1 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC18.68■□□□□ 0.58
Sh3rf1Q69ZI1 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sh3rf1Q69ZI1 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC18.67■□□□□ 0.58
Sh3rf1Q69ZI1 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sh3rf1Q69ZI1 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Sh3rf1Q69ZI1 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sh3rf1Q69ZI1 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 57.8 ms