Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CtcfQ61164 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CtcfQ61164 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CtcfQ61164 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CtcfQ61164 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CtcfQ61164 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
CtcfQ61164 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
CtcfQ61164 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CtcfQ61164 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CtcfQ61164 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CtcfQ61164 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CtcfQ61164 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CtcfQ61164 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CtcfQ61164 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CtcfQ61164 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CtcfQ61164 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
CtcfQ61164 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CtcfQ61164 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC20.47■□□□□ 0.87
CtcfQ61164 Gm8493-201ENSMUST00000196881 489 ntBASIC20.47■□□□□ 0.87
CtcfQ61164 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CtcfQ61164 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC20.47■□□□□ 0.87
CtcfQ61164 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CtcfQ61164 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CtcfQ61164 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CtcfQ61164 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CtcfQ61164 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CtcfQ61164 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC20.46■□□□□ 0.87
CtcfQ61164 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CtcfQ61164 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
CtcfQ61164 Gm42922-201ENSMUST00000195887 2078 ntBASIC20.46■□□□□ 0.87
CtcfQ61164 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC20.46■□□□□ 0.87
CtcfQ61164 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CtcfQ61164 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
CtcfQ61164 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC20.46■□□□□ 0.87
CtcfQ61164 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC20.46■□□□□ 0.87
CtcfQ61164 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CtcfQ61164 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CtcfQ61164 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CtcfQ61164 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CtcfQ61164 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
CtcfQ61164 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CtcfQ61164 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CtcfQ61164 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC20.45■□□□□ 0.86
CtcfQ61164 CT030146.1-201ENSMUST00000220919 217 ntBASIC20.45■□□□□ 0.86
CtcfQ61164 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC20.45■□□□□ 0.86
CtcfQ61164 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CtcfQ61164 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC20.45■□□□□ 0.86
CtcfQ61164 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CtcfQ61164 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.44■□□□□ 0.86
CtcfQ61164 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CtcfQ61164 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC20.44■□□□□ 0.86
CtcfQ61164 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CtcfQ61164 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CtcfQ61164 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CtcfQ61164 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CtcfQ61164 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CtcfQ61164 Fst-202ENSMUST00000223640 2612 ntBASIC20.44■□□□□ 0.86
CtcfQ61164 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CtcfQ61164 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CtcfQ61164 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CtcfQ61164 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CtcfQ61164 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
CtcfQ61164 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CtcfQ61164 Gm11421-201ENSMUST00000122124 294 ntBASIC20.43■□□□□ 0.86
CtcfQ61164 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC20.43■□□□□ 0.86
CtcfQ61164 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CtcfQ61164 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
CtcfQ61164 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CtcfQ61164 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CtcfQ61164 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CtcfQ61164 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CtcfQ61164 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CtcfQ61164 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
CtcfQ61164 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC20.42■□□□□ 0.86
CtcfQ61164 Wdr70-203ENSMUST00000227371 1130 ntBASIC20.42■□□□□ 0.86
CtcfQ61164 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
CtcfQ61164 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
CtcfQ61164 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CtcfQ61164 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CtcfQ61164 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CtcfQ61164 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CtcfQ61164 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CtcfQ61164 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CtcfQ61164 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CtcfQ61164 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC20.41■□□□□ 0.86
CtcfQ61164 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC20.41■□□□□ 0.86
CtcfQ61164 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC20.41■□□□□ 0.86
CtcfQ61164 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 87.1 ms