Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CtcfQ61164 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CtcfQ61164 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CtcfQ61164 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CtcfQ61164 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CtcfQ61164 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
CtcfQ61164 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
CtcfQ61164 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CtcfQ61164 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CtcfQ61164 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CtcfQ61164 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CtcfQ61164 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CtcfQ61164 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CtcfQ61164 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CtcfQ61164 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CtcfQ61164 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
CtcfQ61164 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CtcfQ61164 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC20.47■□□□□ 0.87
CtcfQ61164 Gm8493-201ENSMUST00000196881 489 ntBASIC20.47■□□□□ 0.87
CtcfQ61164 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CtcfQ61164 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC20.47■□□□□ 0.87
CtcfQ61164 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CtcfQ61164 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CtcfQ61164 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CtcfQ61164 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CtcfQ61164 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CtcfQ61164 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC20.46■□□□□ 0.87
CtcfQ61164 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CtcfQ61164 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
CtcfQ61164 Gm42922-201ENSMUST00000195887 2078 ntBASIC20.46■□□□□ 0.87
CtcfQ61164 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC20.46■□□□□ 0.87
CtcfQ61164 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CtcfQ61164 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
CtcfQ61164 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC20.46■□□□□ 0.87
CtcfQ61164 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC20.46■□□□□ 0.87
CtcfQ61164 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CtcfQ61164 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CtcfQ61164 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CtcfQ61164 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CtcfQ61164 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
CtcfQ61164 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CtcfQ61164 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CtcfQ61164 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC20.45■□□□□ 0.86
CtcfQ61164 CT030146.1-201ENSMUST00000220919 217 ntBASIC20.45■□□□□ 0.86
CtcfQ61164 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC20.45■□□□□ 0.86
CtcfQ61164 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CtcfQ61164 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC20.45■□□□□ 0.86
CtcfQ61164 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CtcfQ61164 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.44■□□□□ 0.86
CtcfQ61164 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CtcfQ61164 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC20.44■□□□□ 0.86
CtcfQ61164 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CtcfQ61164 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CtcfQ61164 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CtcfQ61164 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CtcfQ61164 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CtcfQ61164 Fst-202ENSMUST00000223640 2612 ntBASIC20.44■□□□□ 0.86
CtcfQ61164 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CtcfQ61164 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CtcfQ61164 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CtcfQ61164 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CtcfQ61164 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
CtcfQ61164 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CtcfQ61164 Gm11421-201ENSMUST00000122124 294 ntBASIC20.43■□□□□ 0.86
CtcfQ61164 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC20.43■□□□□ 0.86
CtcfQ61164 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CtcfQ61164 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
CtcfQ61164 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CtcfQ61164 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CtcfQ61164 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CtcfQ61164 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CtcfQ61164 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CtcfQ61164 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
CtcfQ61164 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC20.42■□□□□ 0.86
CtcfQ61164 Wdr70-203ENSMUST00000227371 1130 ntBASIC20.42■□□□□ 0.86
CtcfQ61164 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
CtcfQ61164 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
CtcfQ61164 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CtcfQ61164 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CtcfQ61164 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CtcfQ61164 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CtcfQ61164 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CtcfQ61164 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CtcfQ61164 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CtcfQ61164 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CtcfQ61164 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC20.41■□□□□ 0.86
CtcfQ61164 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC20.41■□□□□ 0.86
CtcfQ61164 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC20.41■□□□□ 0.86
CtcfQ61164 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms