Protein–RNA interactions for Protein: S4R1E0

H2afb1, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb1S4R1E0 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
H2afb1S4R1E0 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
H2afb1S4R1E0 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
H2afb1S4R1E0 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
H2afb1S4R1E0 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
H2afb1S4R1E0 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
H2afb1S4R1E0 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
H2afb1S4R1E0 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
H2afb1S4R1E0 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
H2afb1S4R1E0 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
H2afb1S4R1E0 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
H2afb1S4R1E0 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC17■□□□□ 0.31
H2afb1S4R1E0 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
H2afb1S4R1E0 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC17■□□□□ 0.31
H2afb1S4R1E0 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC17■□□□□ 0.31
H2afb1S4R1E0 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC17■□□□□ 0.31
H2afb1S4R1E0 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC17■□□□□ 0.31
H2afb1S4R1E0 Spcs1-204ENSMUST00000226782 949 ntBASIC17■□□□□ 0.31
H2afb1S4R1E0 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
H2afb1S4R1E0 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC17■□□□□ 0.31
H2afb1S4R1E0 Gm32699-201ENSMUST00000221728 1988 ntBASIC17■□□□□ 0.31
H2afb1S4R1E0 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
H2afb1S4R1E0 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
H2afb1S4R1E0 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
H2afb1S4R1E0 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
H2afb1S4R1E0 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
H2afb1S4R1E0 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
H2afb1S4R1E0 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
H2afb1S4R1E0 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
H2afb1S4R1E0 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
H2afb1S4R1E0 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
H2afb1S4R1E0 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
H2afb1S4R1E0 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC16.99■□□□□ 0.31
H2afb1S4R1E0 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC16.99■□□□□ 0.31
H2afb1S4R1E0 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
H2afb1S4R1E0 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
H2afb1S4R1E0 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
H2afb1S4R1E0 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
H2afb1S4R1E0 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
H2afb1S4R1E0 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
H2afb1S4R1E0 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC16.98■□□□□ 0.31
H2afb1S4R1E0 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
H2afb1S4R1E0 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
H2afb1S4R1E0 Gm5540-201ENSMUST00000131852 1848 ntBASIC16.98■□□□□ 0.31
H2afb1S4R1E0 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
H2afb1S4R1E0 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
H2afb1S4R1E0 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC16.98■□□□□ 0.31
H2afb1S4R1E0 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
H2afb1S4R1E0 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
H2afb1S4R1E0 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
H2afb1S4R1E0 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC16.98■□□□□ 0.31
H2afb1S4R1E0 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
H2afb1S4R1E0 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
H2afb1S4R1E0 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
H2afb1S4R1E0 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
H2afb1S4R1E0 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
H2afb1S4R1E0 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
H2afb1S4R1E0 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
H2afb1S4R1E0 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
H2afb1S4R1E0 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC16.97■□□□□ 0.31
H2afb1S4R1E0 Gm45606-201ENSMUST00000209836 2795 ntBASIC16.97■□□□□ 0.31
H2afb1S4R1E0 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
H2afb1S4R1E0 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
H2afb1S4R1E0 Grk6-206ENSMUST00000224995 2971 ntBASIC16.97■□□□□ 0.31
H2afb1S4R1E0 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
H2afb1S4R1E0 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC16.97■□□□□ 0.31
H2afb1S4R1E0 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
H2afb1S4R1E0 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
H2afb1S4R1E0 AC140930.3-201ENSMUST00000222935 274 ntBASIC16.97■□□□□ 0.31
H2afb1S4R1E0 Gm13241-201ENSMUST00000094493 780 ntBASIC16.97■□□□□ 0.31
H2afb1S4R1E0 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
H2afb1S4R1E0 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
H2afb1S4R1E0 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
H2afb1S4R1E0 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
H2afb1S4R1E0 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
H2afb1S4R1E0 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC16.97■□□□□ 0.31
H2afb1S4R1E0 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
H2afb1S4R1E0 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
H2afb1S4R1E0 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
H2afb1S4R1E0 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
H2afb1S4R1E0 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
H2afb1S4R1E0 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
H2afb1S4R1E0 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
H2afb1S4R1E0 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
H2afb1S4R1E0 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
H2afb1S4R1E0 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC16.96■□□□□ 0.31
H2afb1S4R1E0 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
H2afb1S4R1E0 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
H2afb1S4R1E0 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
H2afb1S4R1E0 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
H2afb1S4R1E0 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
H2afb1S4R1E0 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
H2afb1S4R1E0 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
H2afb1S4R1E0 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
H2afb1S4R1E0 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
H2afb1S4R1E0 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
H2afb1S4R1E0 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
H2afb1S4R1E0 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
H2afb1S4R1E0 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
H2afb1S4R1E0 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms