Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Vps28Q9D1C8 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps28Q9D1C8 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps28Q9D1C8 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Vps28Q9D1C8 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps28Q9D1C8 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps28Q9D1C8 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps28Q9D1C8 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps28Q9D1C8 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC19.4■□□□□ 0.7
Vps28Q9D1C8 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps28Q9D1C8 Ap3s1-204ENSMUST00000225520 957 ntBASIC19.4■□□□□ 0.7
Vps28Q9D1C8 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps28Q9D1C8 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps28Q9D1C8 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Vps28Q9D1C8 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps28Q9D1C8 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Vps28Q9D1C8 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Vps28Q9D1C8 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Vps28Q9D1C8 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Vps28Q9D1C8 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC19.39■□□□□ 0.69
Vps28Q9D1C8 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC19.39■□□□□ 0.69
Vps28Q9D1C8 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Vps28Q9D1C8 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Vps28Q9D1C8 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Vps28Q9D1C8 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Vps28Q9D1C8 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Vps28Q9D1C8 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Vps28Q9D1C8 Gm32699-201ENSMUST00000221728 1988 ntBASIC19.39■□□□□ 0.69
Vps28Q9D1C8 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Vps28Q9D1C8 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
Vps28Q9D1C8 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Vps28Q9D1C8 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Vps28Q9D1C8 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
Vps28Q9D1C8 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vps28Q9D1C8 CT010467.1-202ENSMUST00000205406 714 ntBASIC19.38■□□□□ 0.69
Vps28Q9D1C8 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC19.38■□□□□ 0.69
Vps28Q9D1C8 Gm7514-201ENSMUST00000209475 934 ntBASIC19.38■□□□□ 0.69
Vps28Q9D1C8 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vps28Q9D1C8 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vps28Q9D1C8 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vps28Q9D1C8 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
Vps28Q9D1C8 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vps28Q9D1C8 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Vps28Q9D1C8 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Vps28Q9D1C8 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Vps28Q9D1C8 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
Vps28Q9D1C8 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Vps28Q9D1C8 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC19.37■□□□□ 0.69
Vps28Q9D1C8 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Vps28Q9D1C8 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Vps28Q9D1C8 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Vps28Q9D1C8 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC19.37■□□□□ 0.69
Vps28Q9D1C8 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Vps28Q9D1C8 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Vps28Q9D1C8 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Vps28Q9D1C8 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.36■□□□□ 0.69
Vps28Q9D1C8 Gm13146-201ENSMUST00000118508 780 ntBASIC19.36■□□□□ 0.69
Vps28Q9D1C8 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Vps28Q9D1C8 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC19.36■□□□□ 0.69
Vps28Q9D1C8 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Vps28Q9D1C8 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Vps28Q9D1C8 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Vps28Q9D1C8 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Vps28Q9D1C8 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Vps28Q9D1C8 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Vps28Q9D1C8 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
Vps28Q9D1C8 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Vps28Q9D1C8 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Vps28Q9D1C8 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Vps28Q9D1C8 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Vps28Q9D1C8 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Vps28Q9D1C8 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC19.35■□□□□ 0.69
Vps28Q9D1C8 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Vps28Q9D1C8 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Vps28Q9D1C8 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Vps28Q9D1C8 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Vps28Q9D1C8 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Vps28Q9D1C8 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Vps28Q9D1C8 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Vps28Q9D1C8 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Vps28Q9D1C8 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Vps28Q9D1C8 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Vps28Q9D1C8 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Vps28Q9D1C8 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Vps28Q9D1C8 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC19.34■□□□□ 0.69
Vps28Q9D1C8 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC19.34■□□□□ 0.69
Vps28Q9D1C8 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC19.34■□□□□ 0.69
Vps28Q9D1C8 Gm37179-201ENSMUST00000194862 823 ntBASIC19.34■□□□□ 0.69
Vps28Q9D1C8 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC19.34■□□□□ 0.69
Vps28Q9D1C8 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Vps28Q9D1C8 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Vps28Q9D1C8 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Vps28Q9D1C8 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Vps28Q9D1C8 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Vps28Q9D1C8 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Vps28Q9D1C8 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Vps28Q9D1C8 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Vps28Q9D1C8 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Vps28Q9D1C8 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Vps28Q9D1C8 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms