Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Msh3P13705 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Msh3P13705 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Msh3P13705 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Msh3P13705 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Msh3P13705 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Msh3P13705 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Msh3P13705 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC21.06■□□□□ 0.96
Msh3P13705 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC21.06■□□□□ 0.96
Msh3P13705 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Msh3P13705 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Msh3P13705 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Msh3P13705 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Msh3P13705 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Msh3P13705 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
Msh3P13705 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Msh3P13705 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Msh3P13705 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Msh3P13705 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC21.05■□□□□ 0.96
Msh3P13705 CT010467.1-202ENSMUST00000205406 714 ntBASIC21.05■□□□□ 0.96
Msh3P13705 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Msh3P13705 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Msh3P13705 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Msh3P13705 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Msh3P13705 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Msh3P13705 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Msh3P13705 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Msh3P13705 Gm13146-201ENSMUST00000118508 780 ntBASIC21.04■□□□□ 0.96
Msh3P13705 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Msh3P13705 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Msh3P13705 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Msh3P13705 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Msh3P13705 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
Msh3P13705 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Msh3P13705 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Msh3P13705 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Msh3P13705 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Msh3P13705 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Msh3P13705 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
Msh3P13705 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC21.03■□□□□ 0.96
Msh3P13705 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Msh3P13705 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Msh3P13705 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
Msh3P13705 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC21.03■□□□□ 0.96
Msh3P13705 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Msh3P13705 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Msh3P13705 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC21.03■□□□□ 0.96
Msh3P13705 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
Msh3P13705 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Msh3P13705 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC21.02■□□□□ 0.96
Msh3P13705 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Msh3P13705 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
Msh3P13705 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Msh3P13705 Gm10129-202ENSMUST00000193100 1316 ntBASIC21.02■□□□□ 0.95
Msh3P13705 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Msh3P13705 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC21.01■□□□□ 0.95
Msh3P13705 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC21.01■□□□□ 0.95
Msh3P13705 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Msh3P13705 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Msh3P13705 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Msh3P13705 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Msh3P13705 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Msh3P13705 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
Msh3P13705 Gm43231-201ENSMUST00000202960 2258 ntBASIC21.01■□□□□ 0.95
Msh3P13705 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Msh3P13705 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC21■□□□□ 0.95
Msh3P13705 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Msh3P13705 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC21■□□□□ 0.95
Msh3P13705 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC21■□□□□ 0.95
Msh3P13705 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Msh3P13705 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC21■□□□□ 0.95
Msh3P13705 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Msh3P13705 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Msh3P13705 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Msh3P13705 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Msh3P13705 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Msh3P13705 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC20.99■□□□□ 0.95
Msh3P13705 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Msh3P13705 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Msh3P13705 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Msh3P13705 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Msh3P13705 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Msh3P13705 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC20.99■□□□□ 0.95
Msh3P13705 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Msh3P13705 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.99■□□□□ 0.95
Msh3P13705 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Msh3P13705 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Msh3P13705 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Msh3P13705 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Msh3P13705 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Msh3P13705 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC20.98■□□□□ 0.95
Msh3P13705 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Msh3P13705 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Msh3P13705 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Msh3P13705 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Msh3P13705 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Msh3P13705 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Msh3P13705 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Msh3P13705 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC20.98■□□□□ 0.95
Msh3P13705 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 96.9 ms