Protein–RNA interactions for Protein: A0A075B6B3

Trav6d-3, T cell receptor alpha variable 6D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-3A0A075B6B3 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6d-3A0A075B6B3 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC15.35■□□□□ 0.05
Trav6d-3A0A075B6B3 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6d-3A0A075B6B3 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6d-3A0A075B6B3 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6d-3A0A075B6B3 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav6d-3A0A075B6B3 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC15.34■□□□□ 0.05
Trav6d-3A0A075B6B3 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC15.34■□□□□ 0.05
Trav6d-3A0A075B6B3 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav6d-3A0A075B6B3 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC15.34■□□□□ 0.05
Trav6d-3A0A075B6B3 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC15.34■□□□□ 0.05
Trav6d-3A0A075B6B3 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav6d-3A0A075B6B3 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav6d-3A0A075B6B3 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC15.34■□□□□ 0.05
Trav6d-3A0A075B6B3 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Trav6d-3A0A075B6B3 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Trav6d-3A0A075B6B3 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC15.33■□□□□ 0.05
Trav6d-3A0A075B6B3 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
Trav6d-3A0A075B6B3 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Trav6d-3A0A075B6B3 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trav6d-3A0A075B6B3 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Trav6d-3A0A075B6B3 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trav6d-3A0A075B6B3 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trav6d-3A0A075B6B3 Spcs1-204ENSMUST00000226782 949 ntBASIC15.33■□□□□ 0.04
Trav6d-3A0A075B6B3 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Trav6d-3A0A075B6B3 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trav6d-3A0A075B6B3 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trav6d-3A0A075B6B3 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trav6d-3A0A075B6B3 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trav6d-3A0A075B6B3 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trav6d-3A0A075B6B3 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Trav6d-3A0A075B6B3 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC15.33■□□□□ 0.04
Trav6d-3A0A075B6B3 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trav6d-3A0A075B6B3 Dapk1-207ENSMUST00000226059 5009 ntBASIC15.32■□□□□ 0.04
Trav6d-3A0A075B6B3 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav6d-3A0A075B6B3 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Trav6d-3A0A075B6B3 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Trav6d-3A0A075B6B3 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trav6d-3A0A075B6B3 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC15.32■□□□□ 0.04
Trav6d-3A0A075B6B3 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav6d-3A0A075B6B3 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav6d-3A0A075B6B3 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav6d-3A0A075B6B3 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav6d-3A0A075B6B3 Gm6627-201ENSMUST00000218299 2386 ntBASIC15.32■□□□□ 0.04
Trav6d-3A0A075B6B3 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6d-3A0A075B6B3 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC15.31■□□□□ 0.04
Trav6d-3A0A075B6B3 Gm7160-202ENSMUST00000188519 1027 ntBASIC15.31■□□□□ 0.04
Trav6d-3A0A075B6B3 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6d-3A0A075B6B3 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6d-3A0A075B6B3 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC15.31■□□□□ 0.04
Trav6d-3A0A075B6B3 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6d-3A0A075B6B3 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6d-3A0A075B6B3 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC15.31■□□□□ 0.04
Trav6d-3A0A075B6B3 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6d-3A0A075B6B3 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6d-3A0A075B6B3 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6d-3A0A075B6B3 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6d-3A0A075B6B3 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6d-3A0A075B6B3 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6d-3A0A075B6B3 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6d-3A0A075B6B3 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Trav6d-3A0A075B6B3 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6d-3A0A075B6B3 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC15.3■□□□□ 0.04
Trav6d-3A0A075B6B3 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Trav6d-3A0A075B6B3 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trav6d-3A0A075B6B3 Gm5540-201ENSMUST00000131852 1848 ntBASIC15.3■□□□□ 0.04
Trav6d-3A0A075B6B3 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC15.3■□□□□ 0.04
Trav6d-3A0A075B6B3 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trav6d-3A0A075B6B3 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trav6d-3A0A075B6B3 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trav6d-3A0A075B6B3 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trav6d-3A0A075B6B3 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trav6d-3A0A075B6B3 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trav6d-3A0A075B6B3 Gm9847-201ENSMUST00000052528 599 ntBASIC15.3■□□□□ 0.04
Trav6d-3A0A075B6B3 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
Trav6d-3A0A075B6B3 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
Trav6d-3A0A075B6B3 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trav6d-3A0A075B6B3 Rncr4-201ENSMUST00000194541 2234 ntBASIC15.29■□□□□ 0.04
Trav6d-3A0A075B6B3 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trav6d-3A0A075B6B3 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trav6d-3A0A075B6B3 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trav6d-3A0A075B6B3 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trav6d-3A0A075B6B3 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trav6d-3A0A075B6B3 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trav6d-3A0A075B6B3 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trav6d-3A0A075B6B3 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC15.29■□□□□ 0.04
Trav6d-3A0A075B6B3 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trav6d-3A0A075B6B3 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trav6d-3A0A075B6B3 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trav6d-3A0A075B6B3 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trav6d-3A0A075B6B3 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trav6d-3A0A075B6B3 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trav6d-3A0A075B6B3 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav6d-3A0A075B6B3 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav6d-3A0A075B6B3 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Trav6d-3A0A075B6B3 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Trav6d-3A0A075B6B3 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav6d-3A0A075B6B3 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC15.28■□□□□ 0.04
Trav6d-3A0A075B6B3 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC15.28■□□□□ 0.04
Trav6d-3A0A075B6B3 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms