Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC27.69■■■□□ 2.02
Prpf40aQ9R1C7 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Prpf40aQ9R1C7 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Prpf40aQ9R1C7 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
Prpf40aQ9R1C7 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
Prpf40aQ9R1C7 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC27.66■■■□□ 2.02
Prpf40aQ9R1C7 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
Prpf40aQ9R1C7 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
Prpf40aQ9R1C7 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC27.65■■■□□ 2.02
Prpf40aQ9R1C7 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
Prpf40aQ9R1C7 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC27.64■■■□□ 2.02
Prpf40aQ9R1C7 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
Prpf40aQ9R1C7 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
Prpf40aQ9R1C7 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
Prpf40aQ9R1C7 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
Prpf40aQ9R1C7 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC27.6■■■□□ 2.01
Prpf40aQ9R1C7 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC27.59■■■□□ 2.01
Prpf40aQ9R1C7 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Prpf40aQ9R1C7 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC27.58■■■□□ 2.01
Prpf40aQ9R1C7 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Prpf40aQ9R1C7 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC27.57■■■□□ 2
Prpf40aQ9R1C7 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
Prpf40aQ9R1C7 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC27.55■■■□□ 2
Prpf40aQ9R1C7 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC27.55■■■□□ 2
Prpf40aQ9R1C7 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
Prpf40aQ9R1C7 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
Prpf40aQ9R1C7 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC27.53■■■□□ 2
Prpf40aQ9R1C7 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC27.53■■■□□ 2
Prpf40aQ9R1C7 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Prpf40aQ9R1C7 Gm6206-201ENSMUST00000133472 2199 ntBASIC27.51■■□□□ 1.99
Prpf40aQ9R1C7 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
Prpf40aQ9R1C7 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC27.5■■□□□ 1.99
Prpf40aQ9R1C7 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC27.5■■□□□ 1.99
Prpf40aQ9R1C7 Gm9905-201ENSMUST00000065740 1845 ntBASIC27.5■■□□□ 1.99
Prpf40aQ9R1C7 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC27.49■■□□□ 1.99
Prpf40aQ9R1C7 Zxda-201ENSMUST00000117281 2621 ntBASIC27.49■■□□□ 1.99
Prpf40aQ9R1C7 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC27.49■■□□□ 1.99
Prpf40aQ9R1C7 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
Prpf40aQ9R1C7 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC27.48■■□□□ 1.99
Prpf40aQ9R1C7 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
Prpf40aQ9R1C7 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC27.48■■□□□ 1.99
Prpf40aQ9R1C7 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
Prpf40aQ9R1C7 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC27.44■■□□□ 1.98
Prpf40aQ9R1C7 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC27.43■■□□□ 1.98
Prpf40aQ9R1C7 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC27.42■■□□□ 1.98
Prpf40aQ9R1C7 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC27.4■■□□□ 1.98
Prpf40aQ9R1C7 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC27.39■■□□□ 1.98
Prpf40aQ9R1C7 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC27.39■■□□□ 1.98
Prpf40aQ9R1C7 Zfp131-205ENSMUST00000223812 663 ntBASIC27.39■■□□□ 1.98
Prpf40aQ9R1C7 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC27.39■■□□□ 1.98
Prpf40aQ9R1C7 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
Prpf40aQ9R1C7 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
Prpf40aQ9R1C7 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC27.37■■□□□ 1.97
Prpf40aQ9R1C7 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Prpf40aQ9R1C7 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC27.36■■□□□ 1.97
Prpf40aQ9R1C7 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC27.36■■□□□ 1.97
Prpf40aQ9R1C7 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC27.36■■□□□ 1.97
Prpf40aQ9R1C7 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
Prpf40aQ9R1C7 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
Prpf40aQ9R1C7 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
Prpf40aQ9R1C7 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC27.33■■□□□ 1.97
Prpf40aQ9R1C7 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC27.33■■□□□ 1.97
Prpf40aQ9R1C7 Gm43445-201ENSMUST00000198564 2091 ntBASIC27.32■■□□□ 1.96
Prpf40aQ9R1C7 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Prpf40aQ9R1C7 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Prpf40aQ9R1C7 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Prpf40aQ9R1C7 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC27.3■■□□□ 1.96
Prpf40aQ9R1C7 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
Prpf40aQ9R1C7 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC27.29■■□□□ 1.96
Prpf40aQ9R1C7 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC27.29■■□□□ 1.96
Prpf40aQ9R1C7 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
Prpf40aQ9R1C7 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Prpf40aQ9R1C7 Gm30346-201ENSMUST00000218641 1699 ntBASIC27.27■■□□□ 1.96
Prpf40aQ9R1C7 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.96
Prpf40aQ9R1C7 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Prpf40aQ9R1C7 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC27.26■■□□□ 1.95
Prpf40aQ9R1C7 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Prpf40aQ9R1C7 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
Prpf40aQ9R1C7 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Prpf40aQ9R1C7 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC27.23■■□□□ 1.95
Prpf40aQ9R1C7 Gm6345-201ENSMUST00000180378 1691 ntBASIC27.21■■□□□ 1.95
Prpf40aQ9R1C7 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC27.21■■□□□ 1.95
Prpf40aQ9R1C7 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
Prpf40aQ9R1C7 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
Prpf40aQ9R1C7 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Prpf40aQ9R1C7 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
Prpf40aQ9R1C7 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
Prpf40aQ9R1C7 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC27.17■■□□□ 1.94
Prpf40aQ9R1C7 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC27.15■■□□□ 1.94
Prpf40aQ9R1C7 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Prpf40aQ9R1C7 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Prpf40aQ9R1C7 Tdp2-203ENSMUST00000223804 1136 ntBASIC27.14■■□□□ 1.94
Prpf40aQ9R1C7 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
Prpf40aQ9R1C7 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC27.13■■□□□ 1.93
Prpf40aQ9R1C7 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Prpf40aQ9R1C7 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Prpf40aQ9R1C7 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC27.11■■□□□ 1.93
Prpf40aQ9R1C7 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC27.11■■□□□ 1.93
Prpf40aQ9R1C7 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
Prpf40aQ9R1C7 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Retrieved 100 of 76,532 protein–RNA pairs in 110.5 ms