Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Scn11aQ9R053 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Scn11aQ9R053 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Scn11aQ9R053 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC31.32■■■□□ 2.6
Scn11aQ9R053 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Scn11aQ9R053 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC31.3■■■□□ 2.6
Scn11aQ9R053 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Scn11aQ9R053 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Scn11aQ9R053 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Scn11aQ9R053 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC31.28■■■□□ 2.6
Scn11aQ9R053 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC31.28■■■□□ 2.6
Scn11aQ9R053 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
Scn11aQ9R053 Gm2415-204ENSMUST00000190235 2004 ntBASIC31.27■■■□□ 2.6
Scn11aQ9R053 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Scn11aQ9R053 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Scn11aQ9R053 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
Scn11aQ9R053 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC31.22■■■□□ 2.59
Scn11aQ9R053 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Scn11aQ9R053 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Scn11aQ9R053 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC31.2■■■□□ 2.59
Scn11aQ9R053 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC31.2■■■□□ 2.58
Scn11aQ9R053 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.58
Scn11aQ9R053 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC31.2■■■□□ 2.58
Scn11aQ9R053 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
Scn11aQ9R053 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Scn11aQ9R053 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC31.17■■■□□ 2.58
Scn11aQ9R053 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Scn11aQ9R053 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC31.16■■■□□ 2.58
Scn11aQ9R053 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Scn11aQ9R053 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
Scn11aQ9R053 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC31.15■■■□□ 2.58
Scn11aQ9R053 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
Scn11aQ9R053 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
Scn11aQ9R053 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC31.13■■■□□ 2.57
Scn11aQ9R053 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC31.13■■■□□ 2.57
Scn11aQ9R053 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
Scn11aQ9R053 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC31.12■■■□□ 2.57
Scn11aQ9R053 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Scn11aQ9R053 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC31.12■■■□□ 2.57
Scn11aQ9R053 Gm24970-201ENSMUST00000175582 82 ntBASIC31.12■■■□□ 2.57
Scn11aQ9R053 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Scn11aQ9R053 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC31.11■■■□□ 2.57
Scn11aQ9R053 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
Scn11aQ9R053 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
Scn11aQ9R053 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC31.09■■■□□ 2.57
Scn11aQ9R053 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
Scn11aQ9R053 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC31.08■■■□□ 2.57
Scn11aQ9R053 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC31.07■■■□□ 2.56
Scn11aQ9R053 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC31.04■■■□□ 2.56
Scn11aQ9R053 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
Scn11aQ9R053 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC31.03■■■□□ 2.56
Scn11aQ9R053 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
Scn11aQ9R053 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC31.02■■■□□ 2.56
Scn11aQ9R053 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
Scn11aQ9R053 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC31.01■■■□□ 2.55
Scn11aQ9R053 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC31■■■□□ 2.55
Scn11aQ9R053 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC30.99■■■□□ 2.55
Scn11aQ9R053 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Scn11aQ9R053 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Scn11aQ9R053 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
Scn11aQ9R053 Gm30346-201ENSMUST00000218641 1699 ntBASIC30.96■■■□□ 2.55
Scn11aQ9R053 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.55
Scn11aQ9R053 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
Scn11aQ9R053 Gm6658-202ENSMUST00000209493 1885 ntBASIC30.95■■■□□ 2.55
Scn11aQ9R053 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC30.95■■■□□ 2.55
Scn11aQ9R053 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC30.94■■■□□ 2.54
Scn11aQ9R053 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC30.94■■■□□ 2.54
Scn11aQ9R053 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC30.93■■■□□ 2.54
Scn11aQ9R053 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
Scn11aQ9R053 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Scn11aQ9R053 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC30.89■■■□□ 2.54
Scn11aQ9R053 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC30.88■■■□□ 2.53
Scn11aQ9R053 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
Scn11aQ9R053 Gm43863-201ENSMUST00000203822 1192 ntBASIC30.87■■■□□ 2.53
Scn11aQ9R053 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC30.86■■■□□ 2.53
Scn11aQ9R053 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
Scn11aQ9R053 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC30.84■■■□□ 2.53
Scn11aQ9R053 AC157572.2-201ENSMUST00000226970 908 ntBASIC30.83■■■□□ 2.53
Scn11aQ9R053 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
Scn11aQ9R053 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC30.81■■■□□ 2.52
Scn11aQ9R053 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
Scn11aQ9R053 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC30.8■■■□□ 2.52
Scn11aQ9R053 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
Scn11aQ9R053 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC30.78■■■□□ 2.52
Scn11aQ9R053 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC30.78■■■□□ 2.52
Scn11aQ9R053 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Scn11aQ9R053 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
Scn11aQ9R053 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC30.74■■■□□ 2.51
Scn11aQ9R053 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC30.74■■■□□ 2.51
Scn11aQ9R053 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Scn11aQ9R053 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
Scn11aQ9R053 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC30.71■■■□□ 2.51
Scn11aQ9R053 Gm8503-201ENSMUST00000118131 455 ntBASIC30.69■■■□□ 2.5
Scn11aQ9R053 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Scn11aQ9R053 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC30.68■■■□□ 2.5
Scn11aQ9R053 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
Scn11aQ9R053 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC30.67■■■□□ 2.5
Scn11aQ9R053 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
Scn11aQ9R053 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Scn11aQ9R053 Gm9939-201ENSMUST00000067161 1154 ntBASIC30.62■■■□□ 2.49
Retrieved 100 of 76,532 protein–RNA pairs in 49.2 ms