Protein–RNA interactions for Protein: Q91XX1

Pcdhgc3, Protocadherin gamma C3, mousemouse

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgc3Q91XX1 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC23.82■■□□□ 1.4
Pcdhgc3Q91XX1 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Pcdhgc3Q91XX1 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC23.81■■□□□ 1.4
Pcdhgc3Q91XX1 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Pcdhgc3Q91XX1 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
Pcdhgc3Q91XX1 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Pcdhgc3Q91XX1 Gm6345-201ENSMUST00000180378 1691 ntBASIC23.78■■□□□ 1.4
Pcdhgc3Q91XX1 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Pcdhgc3Q91XX1 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Pcdhgc3Q91XX1 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
Pcdhgc3Q91XX1 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Pcdhgc3Q91XX1 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Pcdhgc3Q91XX1 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Pcdhgc3Q91XX1 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC23.74■■□□□ 1.39
Pcdhgc3Q91XX1 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
Pcdhgc3Q91XX1 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Pcdhgc3Q91XX1 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Pcdhgc3Q91XX1 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
Pcdhgc3Q91XX1 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Pcdhgc3Q91XX1 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Pcdhgc3Q91XX1 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Pcdhgc3Q91XX1 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Pcdhgc3Q91XX1 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
Pcdhgc3Q91XX1 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Pcdhgc3Q91XX1 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Pcdhgc3Q91XX1 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Pcdhgc3Q91XX1 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
Pcdhgc3Q91XX1 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Pcdhgc3Q91XX1 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC23.66■■□□□ 1.38
Pcdhgc3Q91XX1 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC23.65■■□□□ 1.38
Pcdhgc3Q91XX1 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.38
Pcdhgc3Q91XX1 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Pcdhgc3Q91XX1 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
Pcdhgc3Q91XX1 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Pcdhgc3Q91XX1 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Pcdhgc3Q91XX1 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Pcdhgc3Q91XX1 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Pcdhgc3Q91XX1 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC23.63■■□□□ 1.37
Pcdhgc3Q91XX1 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
Pcdhgc3Q91XX1 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Pcdhgc3Q91XX1 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Pcdhgc3Q91XX1 AL845457.1-201ENSMUST00000197244 68 ntBASIC23.58■■□□□ 1.37
Pcdhgc3Q91XX1 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Pcdhgc3Q91XX1 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Pcdhgc3Q91XX1 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC23.58■■□□□ 1.36
Pcdhgc3Q91XX1 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Pcdhgc3Q91XX1 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
Pcdhgc3Q91XX1 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
Pcdhgc3Q91XX1 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
Pcdhgc3Q91XX1 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Pcdhgc3Q91XX1 AC153890.1-201ENSMUST00000220021 2469 ntBASIC23.54■■□□□ 1.36
Pcdhgc3Q91XX1 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC23.53■■□□□ 1.36
Pcdhgc3Q91XX1 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Pcdhgc3Q91XX1 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Pcdhgc3Q91XX1 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC23.52■■□□□ 1.35
Pcdhgc3Q91XX1 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Pcdhgc3Q91XX1 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Pcdhgc3Q91XX1 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Pcdhgc3Q91XX1 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Pcdhgc3Q91XX1 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Pcdhgc3Q91XX1 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Pcdhgc3Q91XX1 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Pcdhgc3Q91XX1 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC23.49■■□□□ 1.35
Pcdhgc3Q91XX1 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Pcdhgc3Q91XX1 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
Pcdhgc3Q91XX1 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC23.48■■□□□ 1.35
Pcdhgc3Q91XX1 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Pcdhgc3Q91XX1 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Pcdhgc3Q91XX1 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Pcdhgc3Q91XX1 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
Pcdhgc3Q91XX1 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
Pcdhgc3Q91XX1 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Pcdhgc3Q91XX1 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Pcdhgc3Q91XX1 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
Pcdhgc3Q91XX1 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Pcdhgc3Q91XX1 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Pcdhgc3Q91XX1 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Pcdhgc3Q91XX1 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Pcdhgc3Q91XX1 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC23.39■■□□□ 1.34
Pcdhgc3Q91XX1 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Pcdhgc3Q91XX1 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC23.38■■□□□ 1.33
Pcdhgc3Q91XX1 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Pcdhgc3Q91XX1 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC23.38■■□□□ 1.33
Pcdhgc3Q91XX1 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
Pcdhgc3Q91XX1 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
Pcdhgc3Q91XX1 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Pcdhgc3Q91XX1 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Pcdhgc3Q91XX1 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Pcdhgc3Q91XX1 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
Pcdhgc3Q91XX1 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Pcdhgc3Q91XX1 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
Pcdhgc3Q91XX1 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
Pcdhgc3Q91XX1 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Pcdhgc3Q91XX1 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Pcdhgc3Q91XX1 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.33
Pcdhgc3Q91XX1 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
Pcdhgc3Q91XX1 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Pcdhgc3Q91XX1 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC23.33■■□□□ 1.33
Pcdhgc3Q91XX1 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Pcdhgc3Q91XX1 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms