Protein–RNA interactions for Protein: Q8R1T1

Chmp7, Charged multivesicular body protein 7, mousemouse

Predictions only

Length 451 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp7Q8R1T1 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC33.38■■■□□ 2.93
Chmp7Q8R1T1 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC33.37■■■□□ 2.93
Chmp7Q8R1T1 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC33.36■■■□□ 2.93
Chmp7Q8R1T1 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC33.36■■■□□ 2.93
Chmp7Q8R1T1 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC33.36■■■□□ 2.93
Chmp7Q8R1T1 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC33.35■■■□□ 2.93
Chmp7Q8R1T1 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC33.35■■■□□ 2.93
Chmp7Q8R1T1 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC33.34■■■□□ 2.93
Chmp7Q8R1T1 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
Chmp7Q8R1T1 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC33.33■■■□□ 2.93
Chmp7Q8R1T1 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC33.32■■■□□ 2.92
Chmp7Q8R1T1 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
Chmp7Q8R1T1 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
Chmp7Q8R1T1 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
Chmp7Q8R1T1 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC33.27■■■□□ 2.92
Chmp7Q8R1T1 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC33.27■■■□□ 2.92
Chmp7Q8R1T1 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC33.25■■■□□ 2.91
Chmp7Q8R1T1 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC33.24■■■□□ 2.91
Chmp7Q8R1T1 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC33.24■■■□□ 2.91
Chmp7Q8R1T1 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC33.23■■■□□ 2.91
Chmp7Q8R1T1 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.91
Chmp7Q8R1T1 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC33.19■■■□□ 2.9
Chmp7Q8R1T1 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC33.19■■■□□ 2.9
Chmp7Q8R1T1 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
Chmp7Q8R1T1 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC33.17■■■□□ 2.9
Chmp7Q8R1T1 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
Chmp7Q8R1T1 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC33.15■■■□□ 2.9
Chmp7Q8R1T1 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
Chmp7Q8R1T1 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
Chmp7Q8R1T1 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC33.09■■■□□ 2.89
Chmp7Q8R1T1 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
Chmp7Q8R1T1 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC33.08■■■□□ 2.89
Chmp7Q8R1T1 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC33.07■■■□□ 2.88
Chmp7Q8R1T1 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
Chmp7Q8R1T1 Gm43863-201ENSMUST00000203822 1192 ntBASIC33.06■■■□□ 2.88
Chmp7Q8R1T1 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
Chmp7Q8R1T1 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC33.04■■■□□ 2.88
Chmp7Q8R1T1 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
Chmp7Q8R1T1 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
Chmp7Q8R1T1 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC32.99■■■□□ 2.87
Chmp7Q8R1T1 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC32.99■■■□□ 2.87
Chmp7Q8R1T1 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
Chmp7Q8R1T1 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC32.98■■■□□ 2.87
Chmp7Q8R1T1 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC32.97■■■□□ 2.87
Chmp7Q8R1T1 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
Chmp7Q8R1T1 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
Chmp7Q8R1T1 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC32.95■■■□□ 2.87
Chmp7Q8R1T1 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC32.95■■■□□ 2.86
Chmp7Q8R1T1 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
Chmp7Q8R1T1 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC32.93■■■□□ 2.86
Chmp7Q8R1T1 Gm9939-201ENSMUST00000067161 1154 ntBASIC32.93■■■□□ 2.86
Chmp7Q8R1T1 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC32.93■■■□□ 2.86
Chmp7Q8R1T1 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC32.92■■■□□ 2.86
Chmp7Q8R1T1 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
Chmp7Q8R1T1 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
Chmp7Q8R1T1 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC32.9■■■□□ 2.86
Chmp7Q8R1T1 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC32.88■■■□□ 2.85
Chmp7Q8R1T1 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
Chmp7Q8R1T1 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC32.87■■■□□ 2.85
Chmp7Q8R1T1 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC32.87■■■□□ 2.85
Chmp7Q8R1T1 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC32.85■■■□□ 2.85
Chmp7Q8R1T1 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC32.85■■■□□ 2.85
Chmp7Q8R1T1 AC157572.2-201ENSMUST00000226970 908 ntBASIC32.83■■■□□ 2.85
Chmp7Q8R1T1 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC32.82■■■□□ 2.84
Chmp7Q8R1T1 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
Chmp7Q8R1T1 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
Chmp7Q8R1T1 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC32.79■■■□□ 2.84
Chmp7Q8R1T1 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
Chmp7Q8R1T1 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
Chmp7Q8R1T1 Gm8503-201ENSMUST00000118131 455 ntBASIC32.77■■■□□ 2.84
Chmp7Q8R1T1 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC32.77■■■□□ 2.84
Chmp7Q8R1T1 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
Chmp7Q8R1T1 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
Chmp7Q8R1T1 Gm2415-204ENSMUST00000190235 2004 ntBASIC32.77■■■□□ 2.84
Chmp7Q8R1T1 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
Chmp7Q8R1T1 Gm6821-201ENSMUST00000107540 542 ntBASIC32.73■■■□□ 2.83
Chmp7Q8R1T1 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC32.73■■■□□ 2.83
Chmp7Q8R1T1 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC32.73■■■□□ 2.83
Chmp7Q8R1T1 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC32.72■■■□□ 2.83
Chmp7Q8R1T1 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC32.72■■■□□ 2.83
Chmp7Q8R1T1 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
Chmp7Q8R1T1 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
Chmp7Q8R1T1 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC32.71■■■□□ 2.83
Chmp7Q8R1T1 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC32.69■■■□□ 2.82
Chmp7Q8R1T1 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC32.69■■■□□ 2.82
Chmp7Q8R1T1 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
Chmp7Q8R1T1 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC32.69■■■□□ 2.82
Chmp7Q8R1T1 Gm5987-201ENSMUST00000196433 1151 ntBASIC32.68■■■□□ 2.82
Chmp7Q8R1T1 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
Chmp7Q8R1T1 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
Chmp7Q8R1T1 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC32.67■■■□□ 2.82
Chmp7Q8R1T1 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC32.67■■■□□ 2.82
Chmp7Q8R1T1 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
Chmp7Q8R1T1 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
Chmp7Q8R1T1 Gm30346-201ENSMUST00000218641 1699 ntBASIC32.62■■■□□ 2.81
Chmp7Q8R1T1 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
Chmp7Q8R1T1 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC32.58■■■□□ 2.81
Chmp7Q8R1T1 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
Chmp7Q8R1T1 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC32.58■■■□□ 2.81
Chmp7Q8R1T1 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms