Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC35.9■■■■□ 3.34
Usp40Q8BWR4 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC35.89■■■■□ 3.34
Usp40Q8BWR4 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC35.89■■■■□ 3.34
Usp40Q8BWR4 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC35.88■■■■□ 3.33
Usp40Q8BWR4 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC35.86■■■■□ 3.33
Usp40Q8BWR4 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC35.86■■■■□ 3.33
Usp40Q8BWR4 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC35.86■■■■□ 3.33
Usp40Q8BWR4 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC35.86■■■■□ 3.33
Usp40Q8BWR4 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC35.85■■■■□ 3.33
Usp40Q8BWR4 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC35.84■■■■□ 3.33
Usp40Q8BWR4 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC35.83■■■■□ 3.33
Usp40Q8BWR4 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC35.83■■■■□ 3.33
Usp40Q8BWR4 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC35.82■■■■□ 3.32
Usp40Q8BWR4 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC35.82■■■■□ 3.32
Usp40Q8BWR4 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC35.81■■■■□ 3.32
Usp40Q8BWR4 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC35.81■■■■□ 3.32
Usp40Q8BWR4 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC35.8■■■■□ 3.32
Usp40Q8BWR4 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC35.79■■■■□ 3.32
Usp40Q8BWR4 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC35.79■■■■□ 3.32
Usp40Q8BWR4 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC35.78■■■■□ 3.32
Usp40Q8BWR4 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC35.78■■■■□ 3.32
Usp40Q8BWR4 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC35.75■■■■□ 3.31
Usp40Q8BWR4 Gm24970-201ENSMUST00000175582 82 ntBASIC35.75■■■■□ 3.31
Usp40Q8BWR4 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC35.75■■■■□ 3.31
Usp40Q8BWR4 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC35.74■■■■□ 3.31
Usp40Q8BWR4 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC35.74■■■■□ 3.31
Usp40Q8BWR4 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC35.73■■■■□ 3.31
Usp40Q8BWR4 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC35.72■■■■□ 3.31
Usp40Q8BWR4 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC35.71■■■■□ 3.31
Usp40Q8BWR4 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC35.71■■■■□ 3.31
Usp40Q8BWR4 Gm2415-204ENSMUST00000190235 2004 ntBASIC35.71■■■■□ 3.31
Usp40Q8BWR4 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC35.69■■■■□ 3.3
Usp40Q8BWR4 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC35.68■■■■□ 3.3
Usp40Q8BWR4 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC35.67■■■■□ 3.3
Usp40Q8BWR4 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC35.66■■■■□ 3.3
Usp40Q8BWR4 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC35.66■■■■□ 3.3
Usp40Q8BWR4 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC35.65■■■■□ 3.3
Usp40Q8BWR4 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC35.65■■■■□ 3.3
Usp40Q8BWR4 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC35.63■■■■□ 3.29
Usp40Q8BWR4 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC35.63■■■■□ 3.29
Usp40Q8BWR4 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC35.61■■■■□ 3.29
Usp40Q8BWR4 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC35.61■■■■□ 3.29
Usp40Q8BWR4 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC35.61■■■■□ 3.29
Usp40Q8BWR4 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC35.61■■■■□ 3.29
Usp40Q8BWR4 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC35.6■■■■□ 3.29
Usp40Q8BWR4 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC35.59■■■■□ 3.29
Usp40Q8BWR4 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC35.58■■■■□ 3.29
Usp40Q8BWR4 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC35.56■■■■□ 3.28
Usp40Q8BWR4 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC35.51■■■■□ 3.27
Usp40Q8BWR4 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC35.5■■■■□ 3.27
Usp40Q8BWR4 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC35.49■■■■□ 3.27
Usp40Q8BWR4 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC35.46■■■■□ 3.27
Usp40Q8BWR4 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC35.46■■■■□ 3.27
Usp40Q8BWR4 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC35.46■■■■□ 3.27
Usp40Q8BWR4 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC35.46■■■■□ 3.27
Usp40Q8BWR4 Gm43863-201ENSMUST00000203822 1192 ntBASIC35.45■■■■□ 3.27
Usp40Q8BWR4 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC35.44■■■■□ 3.26
Usp40Q8BWR4 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC35.43■■■■□ 3.26
Usp40Q8BWR4 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC35.43■■■■□ 3.26
Usp40Q8BWR4 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC35.42■■■■□ 3.26
Usp40Q8BWR4 Gm6658-202ENSMUST00000209493 1885 ntBASIC35.39■■■■□ 3.26
Usp40Q8BWR4 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC35.38■■■■□ 3.25
Usp40Q8BWR4 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC35.37■■■■□ 3.25
Usp40Q8BWR4 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC35.37■■■■□ 3.25
Usp40Q8BWR4 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC35.35■■■■□ 3.25
Usp40Q8BWR4 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC35.34■■■■□ 3.25
Usp40Q8BWR4 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC35.33■■■■□ 3.25
Usp40Q8BWR4 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC35.33■■■■□ 3.25
Usp40Q8BWR4 Gm30346-201ENSMUST00000218641 1699 ntBASIC35.33■■■■□ 3.25
Usp40Q8BWR4 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
Usp40Q8BWR4 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC35.3■■■■□ 3.24
Usp40Q8BWR4 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC35.3■■■■□ 3.24
Usp40Q8BWR4 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC35.29■■■■□ 3.24
Usp40Q8BWR4 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC35.24■■■■□ 3.23
Usp40Q8BWR4 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC35.22■■■■□ 3.23
Usp40Q8BWR4 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC35.22■■■■□ 3.23
Usp40Q8BWR4 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC35.22■■■■□ 3.23
Usp40Q8BWR4 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC35.21■■■■□ 3.23
Usp40Q8BWR4 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC35.2■■■■□ 3.23
Usp40Q8BWR4 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC35.2■■■■□ 3.23
Usp40Q8BWR4 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC35.2■■■■□ 3.22
Usp40Q8BWR4 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC35.2■■■■□ 3.22
Usp40Q8BWR4 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC35.19■■■■□ 3.22
Usp40Q8BWR4 AC157572.2-201ENSMUST00000226970 908 ntBASIC35.18■■■■□ 3.22
Usp40Q8BWR4 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC35.18■■■■□ 3.22
Usp40Q8BWR4 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC35.17■■■■□ 3.22
Usp40Q8BWR4 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
Usp40Q8BWR4 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC35.16■■■■□ 3.22
Usp40Q8BWR4 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC35.15■■■■□ 3.22
Usp40Q8BWR4 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC35.15■■■■□ 3.22
Usp40Q8BWR4 Gm9939-201ENSMUST00000067161 1154 ntBASIC35.13■■■■□ 3.21
Usp40Q8BWR4 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC35.12■■■■□ 3.21
Usp40Q8BWR4 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC35.12■■■■□ 3.21
Usp40Q8BWR4 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC35.12■■■■□ 3.21
Usp40Q8BWR4 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC35.1■■■■□ 3.21
Usp40Q8BWR4 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC35.09■■■■□ 3.21
Usp40Q8BWR4 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC35.09■■■■□ 3.21
Usp40Q8BWR4 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC35.07■■■■□ 3.21
Usp40Q8BWR4 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC35.07■■■■□ 3.2
Usp40Q8BWR4 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC35.06■■■■□ 3.2
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms