Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Nr1h4Q60641 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Nr1h4Q60641 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC23.87■■□□□ 1.41
Nr1h4Q60641 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Nr1h4Q60641 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC23.86■■□□□ 1.41
Nr1h4Q60641 Gm27322-201ENSMUST00000184007 104 ntBASIC23.86■■□□□ 1.41
Nr1h4Q60641 Gm17082-201ENSMUST00000166043 1091 ntBASIC23.85■■□□□ 1.41
Nr1h4Q60641 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Nr1h4Q60641 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
Nr1h4Q60641 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Nr1h4Q60641 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC23.84■■□□□ 1.41
Nr1h4Q60641 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Nr1h4Q60641 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Nr1h4Q60641 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Nr1h4Q60641 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Nr1h4Q60641 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Nr1h4Q60641 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Nr1h4Q60641 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC23.8■■□□□ 1.4
Nr1h4Q60641 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Nr1h4Q60641 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Nr1h4Q60641 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Nr1h4Q60641 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Nr1h4Q60641 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Nr1h4Q60641 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC23.77■■□□□ 1.4
Nr1h4Q60641 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
Nr1h4Q60641 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC23.76■■□□□ 1.39
Nr1h4Q60641 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC23.76■■□□□ 1.39
Nr1h4Q60641 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
Nr1h4Q60641 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Nr1h4Q60641 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC23.74■■□□□ 1.39
Nr1h4Q60641 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
Nr1h4Q60641 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Nr1h4Q60641 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Nr1h4Q60641 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Nr1h4Q60641 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC23.72■■□□□ 1.39
Nr1h4Q60641 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Nr1h4Q60641 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
Nr1h4Q60641 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
Nr1h4Q60641 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC23.7■■□□□ 1.38
Nr1h4Q60641 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Nr1h4Q60641 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC23.7■■□□□ 1.38
Nr1h4Q60641 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Nr1h4Q60641 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Nr1h4Q60641 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Nr1h4Q60641 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Nr1h4Q60641 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Nr1h4Q60641 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Nr1h4Q60641 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC23.66■■□□□ 1.38
Nr1h4Q60641 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
Nr1h4Q60641 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC23.65■■□□□ 1.38
Nr1h4Q60641 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Nr1h4Q60641 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Nr1h4Q60641 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Nr1h4Q60641 Amer2-203ENSMUST00000225247 2662 ntBASIC23.62■■□□□ 1.37
Nr1h4Q60641 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Nr1h4Q60641 Gm30346-201ENSMUST00000218641 1699 ntBASIC23.61■■□□□ 1.37
Nr1h4Q60641 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Nr1h4Q60641 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
Nr1h4Q60641 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Nr1h4Q60641 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
Nr1h4Q60641 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Nr1h4Q60641 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
Nr1h4Q60641 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Nr1h4Q60641 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Nr1h4Q60641 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC23.58■■□□□ 1.36
Nr1h4Q60641 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
Nr1h4Q60641 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC23.57■■□□□ 1.36
Nr1h4Q60641 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
Nr1h4Q60641 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
Nr1h4Q60641 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Nr1h4Q60641 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Nr1h4Q60641 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Nr1h4Q60641 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC23.55■■□□□ 1.36
Nr1h4Q60641 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Nr1h4Q60641 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Nr1h4Q60641 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Nr1h4Q60641 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC23.54■■□□□ 1.36
Nr1h4Q60641 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Nr1h4Q60641 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC23.51■■□□□ 1.35
Nr1h4Q60641 Fezf2-202ENSMUST00000224023 1917 ntBASIC23.51■■□□□ 1.35
Nr1h4Q60641 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Nr1h4Q60641 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Nr1h4Q60641 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC23.5■■□□□ 1.35
Nr1h4Q60641 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Nr1h4Q60641 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Nr1h4Q60641 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
Nr1h4Q60641 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
Nr1h4Q60641 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Nr1h4Q60641 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC23.48■■□□□ 1.35
Nr1h4Q60641 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Nr1h4Q60641 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Nr1h4Q60641 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
Nr1h4Q60641 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Nr1h4Q60641 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC23.46■■□□□ 1.35
Nr1h4Q60641 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Nr1h4Q60641 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Nr1h4Q60641 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC23.43■■□□□ 1.34
Nr1h4Q60641 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC23.42■■□□□ 1.34
Nr1h4Q60641 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Nr1h4Q60641 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Retrieved 100 of 76,532 protein–RNA pairs in 12.6 ms