Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC24.11■■□□□ 1.45
Sox3P53784 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Sox3P53784 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
Sox3P53784 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC24.09■■□□□ 1.45
Sox3P53784 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Sox3P53784 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC24.07■■□□□ 1.44
Sox3P53784 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC24.05■■□□□ 1.44
Sox3P53784 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC24.05■■□□□ 1.44
Sox3P53784 Gm8503-201ENSMUST00000118131 455 ntBASIC24.04■■□□□ 1.44
Sox3P53784 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Sox3P53784 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Sox3P53784 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC24.03■■□□□ 1.44
Sox3P53784 Gm9939-201ENSMUST00000067161 1154 ntBASIC24.03■■□□□ 1.44
Sox3P53784 Gm24970-201ENSMUST00000175582 82 ntBASIC24.01■■□□□ 1.43
Sox3P53784 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Sox3P53784 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Sox3P53784 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Sox3P53784 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC23.98■■□□□ 1.43
Sox3P53784 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Sox3P53784 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Sox3P53784 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Sox3P53784 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
Sox3P53784 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Sox3P53784 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Sox3P53784 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Sox3P53784 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
Sox3P53784 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC23.95■■□□□ 1.42
Sox3P53784 Zfp131-207ENSMUST00000224946 1783 ntBASIC23.93■■□□□ 1.42
Sox3P53784 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Sox3P53784 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Sox3P53784 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
Sox3P53784 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Sox3P53784 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Sox3P53784 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Sox3P53784 Gm6658-202ENSMUST00000209493 1885 ntBASIC23.9■■□□□ 1.42
Sox3P53784 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Sox3P53784 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Sox3P53784 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Sox3P53784 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
Sox3P53784 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
Sox3P53784 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Sox3P53784 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
Sox3P53784 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Sox3P53784 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Sox3P53784 Mipep-204ENSMUST00000225043 1548 ntBASIC23.83■■□□□ 1.41
Sox3P53784 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
Sox3P53784 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Sox3P53784 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Sox3P53784 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Sox3P53784 Gm6821-201ENSMUST00000107540 542 ntBASIC23.8■■□□□ 1.4
Sox3P53784 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Sox3P53784 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC23.78■■□□□ 1.4
Sox3P53784 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC23.78■■□□□ 1.4
Sox3P53784 Zxda-201ENSMUST00000117281 2621 ntBASIC23.75■■□□□ 1.39
Sox3P53784 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
Sox3P53784 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC23.71■■□□□ 1.39
Sox3P53784 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC23.71■■□□□ 1.39
Sox3P53784 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
Sox3P53784 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Sox3P53784 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Sox3P53784 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Sox3P53784 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Sox3P53784 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Sox3P53784 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Sox3P53784 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
Sox3P53784 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Sox3P53784 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC23.64■■□□□ 1.37
Sox3P53784 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Sox3P53784 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Sox3P53784 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Sox3P53784 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC23.62■■□□□ 1.37
Sox3P53784 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Sox3P53784 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Sox3P53784 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC23.59■■□□□ 1.37
Sox3P53784 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
Sox3P53784 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Sox3P53784 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Sox3P53784 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Sox3P53784 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Sox3P53784 Gm6206-201ENSMUST00000133472 2199 ntBASIC23.56■■□□□ 1.36
Sox3P53784 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Sox3P53784 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
Sox3P53784 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Sox3P53784 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Sox3P53784 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC23.55■■□□□ 1.36
Sox3P53784 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
Sox3P53784 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC23.54■■□□□ 1.36
Sox3P53784 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Sox3P53784 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Sox3P53784 Gm9905-201ENSMUST00000065740 1845 ntBASIC23.53■■□□□ 1.36
Sox3P53784 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
Sox3P53784 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Sox3P53784 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
Sox3P53784 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Sox3P53784 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Sox3P53784 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC23.49■■□□□ 1.35
Sox3P53784 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Sox3P53784 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
Sox3P53784 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
Sox3P53784 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
Retrieved 100 of 76,532 protein–RNA pairs in 73.5 ms