Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
Chmp6P0C0A3 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
Chmp6P0C0A3 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
Chmp6P0C0A3 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
Chmp6P0C0A3 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
Chmp6P0C0A3 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
Chmp6P0C0A3 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC27.28■■□□□ 1.96
Chmp6P0C0A3 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC27.28■■□□□ 1.96
Chmp6P0C0A3 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC27.28■■□□□ 1.96
Chmp6P0C0A3 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC27.28■■□□□ 1.96
Chmp6P0C0A3 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC27.27■■□□□ 1.96
Chmp6P0C0A3 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Chmp6P0C0A3 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Chmp6P0C0A3 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Chmp6P0C0A3 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC27.25■■□□□ 1.95
Chmp6P0C0A3 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC27.25■■□□□ 1.95
Chmp6P0C0A3 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC27.24■■□□□ 1.95
Chmp6P0C0A3 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC27.23■■□□□ 1.95
Chmp6P0C0A3 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Chmp6P0C0A3 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Chmp6P0C0A3 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC27.22■■□□□ 1.95
Chmp6P0C0A3 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
Chmp6P0C0A3 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
Chmp6P0C0A3 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Chmp6P0C0A3 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
Chmp6P0C0A3 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Chmp6P0C0A3 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC27.14■■□□□ 1.94
Chmp6P0C0A3 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC27.14■■□□□ 1.94
Chmp6P0C0A3 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
Chmp6P0C0A3 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC27.12■■□□□ 1.93
Chmp6P0C0A3 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
Chmp6P0C0A3 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Chmp6P0C0A3 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
Chmp6P0C0A3 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC27.09■■□□□ 1.93
Chmp6P0C0A3 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Chmp6P0C0A3 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
Chmp6P0C0A3 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Chmp6P0C0A3 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
Chmp6P0C0A3 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC27.05■■□□□ 1.92
Chmp6P0C0A3 Zxda-201ENSMUST00000117281 2621 ntBASIC27.04■■□□□ 1.92
Chmp6P0C0A3 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Chmp6P0C0A3 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
Chmp6P0C0A3 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC27.02■■□□□ 1.92
Chmp6P0C0A3 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC27.01■■□□□ 1.92
Chmp6P0C0A3 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC27.01■■□□□ 1.92
Chmp6P0C0A3 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC27.01■■□□□ 1.91
Chmp6P0C0A3 Tdp2-203ENSMUST00000223804 1136 ntBASIC27.01■■□□□ 1.91
Chmp6P0C0A3 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
Chmp6P0C0A3 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
Chmp6P0C0A3 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC26.99■■□□□ 1.91
Chmp6P0C0A3 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Chmp6P0C0A3 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Chmp6P0C0A3 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC26.96■■□□□ 1.91
Chmp6P0C0A3 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC26.96■■□□□ 1.91
Chmp6P0C0A3 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
Chmp6P0C0A3 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Chmp6P0C0A3 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC26.94■■□□□ 1.9
Chmp6P0C0A3 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC26.93■■□□□ 1.9
Chmp6P0C0A3 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Chmp6P0C0A3 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
Chmp6P0C0A3 Gm30346-201ENSMUST00000218641 1699 ntBASIC26.91■■□□□ 1.9
Chmp6P0C0A3 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Chmp6P0C0A3 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Chmp6P0C0A3 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Chmp6P0C0A3 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC26.89■■□□□ 1.9
Chmp6P0C0A3 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC26.89■■□□□ 1.9
Chmp6P0C0A3 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Chmp6P0C0A3 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
Chmp6P0C0A3 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC26.88■■□□□ 1.89
Chmp6P0C0A3 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Chmp6P0C0A3 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Chmp6P0C0A3 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Chmp6P0C0A3 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC26.87■■□□□ 1.89
Chmp6P0C0A3 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC26.87■■□□□ 1.89
Chmp6P0C0A3 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC26.86■■□□□ 1.89
Chmp6P0C0A3 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Chmp6P0C0A3 Gm45855-201ENSMUST00000212546 880 ntBASIC26.85■■□□□ 1.89
Chmp6P0C0A3 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC26.85■■□□□ 1.89
Chmp6P0C0A3 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
Chmp6P0C0A3 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Chmp6P0C0A3 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
Chmp6P0C0A3 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC26.81■■□□□ 1.88
Chmp6P0C0A3 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC26.8■■□□□ 1.88
Chmp6P0C0A3 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC26.8■■□□□ 1.88
Chmp6P0C0A3 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC26.8■■□□□ 1.88
Chmp6P0C0A3 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC26.8■■□□□ 1.88
Chmp6P0C0A3 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Chmp6P0C0A3 Gm9905-201ENSMUST00000065740 1845 ntBASIC26.79■■□□□ 1.88
Chmp6P0C0A3 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC26.79■■□□□ 1.88
Chmp6P0C0A3 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC26.79■■□□□ 1.88
Chmp6P0C0A3 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
Chmp6P0C0A3 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
Chmp6P0C0A3 Gm9397-201ENSMUST00000200125 605 ntBASIC26.76■■□□□ 1.87
Chmp6P0C0A3 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Chmp6P0C0A3 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC26.75■■□□□ 1.87
Chmp6P0C0A3 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Chmp6P0C0A3 Gm6206-201ENSMUST00000133472 2199 ntBASIC26.73■■□□□ 1.87
Chmp6P0C0A3 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Chmp6P0C0A3 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC26.72■■□□□ 1.87
Chmp6P0C0A3 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Retrieved 100 of 76,532 protein–RNA pairs in 14.4 ms