Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
Pcdhgb8A0A140LI48 Mipep-204ENSMUST00000225043 1548 ntBASIC22.45■■□□□ 1.18
Pcdhgb8A0A140LI48 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Pcdhgb8A0A140LI48 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
Pcdhgb8A0A140LI48 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Pcdhgb8A0A140LI48 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Pcdhgb8A0A140LI48 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
Pcdhgb8A0A140LI48 Gm43445-201ENSMUST00000198564 2091 ntBASIC22.42■■□□□ 1.18
Pcdhgb8A0A140LI48 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
Pcdhgb8A0A140LI48 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC22.42■■□□□ 1.18
Pcdhgb8A0A140LI48 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Pcdhgb8A0A140LI48 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
Pcdhgb8A0A140LI48 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Pcdhgb8A0A140LI48 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Pcdhgb8A0A140LI48 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Pcdhgb8A0A140LI48 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Pcdhgb8A0A140LI48 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Pcdhgb8A0A140LI48 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Pcdhgb8A0A140LI48 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.17
Pcdhgb8A0A140LI48 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Pcdhgb8A0A140LI48 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Pcdhgb8A0A140LI48 Zfp131-205ENSMUST00000223812 663 ntBASIC22.37■■□□□ 1.17
Pcdhgb8A0A140LI48 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Pcdhgb8A0A140LI48 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Pcdhgb8A0A140LI48 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
Pcdhgb8A0A140LI48 Peli2-204ENSMUST00000226513 1320 ntBASIC22.34■■□□□ 1.17
Pcdhgb8A0A140LI48 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Pcdhgb8A0A140LI48 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Pcdhgb8A0A140LI48 Gm16148-201ENSMUST00000119653 893 ntBASIC22.33■■□□□ 1.17
Pcdhgb8A0A140LI48 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Pcdhgb8A0A140LI48 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Pcdhgb8A0A140LI48 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
Pcdhgb8A0A140LI48 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
Pcdhgb8A0A140LI48 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Pcdhgb8A0A140LI48 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Pcdhgb8A0A140LI48 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Pcdhgb8A0A140LI48 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Pcdhgb8A0A140LI48 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Pcdhgb8A0A140LI48 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Pcdhgb8A0A140LI48 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
Pcdhgb8A0A140LI48 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Pcdhgb8A0A140LI48 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC22.25■■□□□ 1.15
Pcdhgb8A0A140LI48 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Pcdhgb8A0A140LI48 Amer2-203ENSMUST00000225247 2662 ntBASIC22.24■■□□□ 1.15
Pcdhgb8A0A140LI48 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Pcdhgb8A0A140LI48 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Pcdhgb8A0A140LI48 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Pcdhgb8A0A140LI48 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
Pcdhgb8A0A140LI48 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC22.19■■□□□ 1.14
Pcdhgb8A0A140LI48 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdhgb8A0A140LI48 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdhgb8A0A140LI48 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Pcdhgb8A0A140LI48 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Pcdhgb8A0A140LI48 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdhgb8A0A140LI48 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdhgb8A0A140LI48 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdhgb8A0A140LI48 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC22.17■■□□□ 1.14
Pcdhgb8A0A140LI48 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdhgb8A0A140LI48 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
Pcdhgb8A0A140LI48 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Pcdhgb8A0A140LI48 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Pcdhgb8A0A140LI48 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
Pcdhgb8A0A140LI48 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
Pcdhgb8A0A140LI48 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Pcdhgb8A0A140LI48 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
Pcdhgb8A0A140LI48 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
Pcdhgb8A0A140LI48 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Pcdhgb8A0A140LI48 Fezf2-202ENSMUST00000224023 1917 ntBASIC22.13■■□□□ 1.13
Pcdhgb8A0A140LI48 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC22.13■■□□□ 1.13
Pcdhgb8A0A140LI48 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC22.12■■□□□ 1.13
Pcdhgb8A0A140LI48 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Pcdhgb8A0A140LI48 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Pcdhgb8A0A140LI48 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
Pcdhgb8A0A140LI48 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC22.11■■□□□ 1.13
Pcdhgb8A0A140LI48 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
Pcdhgb8A0A140LI48 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
Pcdhgb8A0A140LI48 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Pcdhgb8A0A140LI48 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
Pcdhgb8A0A140LI48 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Pcdhgb8A0A140LI48 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.13
Pcdhgb8A0A140LI48 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Pcdhgb8A0A140LI48 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC22.08■■□□□ 1.13
Pcdhgb8A0A140LI48 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC22.08■■□□□ 1.13
Pcdhgb8A0A140LI48 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC22.07■■□□□ 1.12
Pcdhgb8A0A140LI48 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Pcdhgb8A0A140LI48 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
Pcdhgb8A0A140LI48 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Pcdhgb8A0A140LI48 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Pcdhgb8A0A140LI48 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Pcdhgb8A0A140LI48 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Pcdhgb8A0A140LI48 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
Pcdhgb8A0A140LI48 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC22.04■■□□□ 1.12
Pcdhgb8A0A140LI48 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Pcdhgb8A0A140LI48 Tdp2-203ENSMUST00000223804 1136 ntBASIC22.03■■□□□ 1.12
Pcdhgb8A0A140LI48 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Pcdhgb8A0A140LI48 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC22.01■■□□□ 1.11
Pcdhgb8A0A140LI48 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Pcdhgb8A0A140LI48 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Pcdhgb8A0A140LI48 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Pcdhgb8A0A140LI48 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms