Protein–RNA interactions for Protein: A0A075B617

Trav16d-dv11, T cell receptor alpha variable 16D-DV11 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16d-dv11A0A075B617 Gm25238-201ENSMUST00000174914 89 ntBASIC18.42■□□□□ 0.54
Trav16d-dv11A0A075B617 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav16d-dv11A0A075B617 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trav16d-dv11A0A075B617 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Trav16d-dv11A0A075B617 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav16d-dv11A0A075B617 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC18.4■□□□□ 0.54
Trav16d-dv11A0A075B617 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC18.39■□□□□ 0.53
Trav16d-dv11A0A075B617 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC18.39■□□□□ 0.53
Trav16d-dv11A0A075B617 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trav16d-dv11A0A075B617 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC18.38■□□□□ 0.53
Trav16d-dv11A0A075B617 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav16d-dv11A0A075B617 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Trav16d-dv11A0A075B617 Mipep-204ENSMUST00000225043 1548 ntBASIC18.37■□□□□ 0.53
Trav16d-dv11A0A075B617 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav16d-dv11A0A075B617 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trav16d-dv11A0A075B617 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trav16d-dv11A0A075B617 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav16d-dv11A0A075B617 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trav16d-dv11A0A075B617 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC18.33■□□□□ 0.52
Trav16d-dv11A0A075B617 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trav16d-dv11A0A075B617 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trav16d-dv11A0A075B617 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Trav16d-dv11A0A075B617 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trav16d-dv11A0A075B617 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC18.3■□□□□ 0.52
Trav16d-dv11A0A075B617 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trav16d-dv11A0A075B617 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Trav16d-dv11A0A075B617 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC18.3■□□□□ 0.52
Trav16d-dv11A0A075B617 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC18.3■□□□□ 0.52
Trav16d-dv11A0A075B617 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trav16d-dv11A0A075B617 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav16d-dv11A0A075B617 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav16d-dv11A0A075B617 Gm6345-201ENSMUST00000180378 1691 ntBASIC18.28■□□□□ 0.52
Trav16d-dv11A0A075B617 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Trav16d-dv11A0A075B617 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trav16d-dv11A0A075B617 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
Trav16d-dv11A0A075B617 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trav16d-dv11A0A075B617 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trav16d-dv11A0A075B617 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav16d-dv11A0A075B617 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav16d-dv11A0A075B617 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav16d-dv11A0A075B617 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav16d-dv11A0A075B617 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC18.23■□□□□ 0.51
Trav16d-dv11A0A075B617 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Trav16d-dv11A0A075B617 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trav16d-dv11A0A075B617 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trav16d-dv11A0A075B617 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
Trav16d-dv11A0A075B617 Rab21-202ENSMUST00000218831 843 ntBASIC18.22■□□□□ 0.51
Trav16d-dv11A0A075B617 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Trav16d-dv11A0A075B617 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trav16d-dv11A0A075B617 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav16d-dv11A0A075B617 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trav16d-dv11A0A075B617 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav16d-dv11A0A075B617 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav16d-dv11A0A075B617 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC18.19■□□□□ 0.5
Trav16d-dv11A0A075B617 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
Trav16d-dv11A0A075B617 AL845457.1-201ENSMUST00000197244 68 ntBASIC18.18■□□□□ 0.5
Trav16d-dv11A0A075B617 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trav16d-dv11A0A075B617 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trav16d-dv11A0A075B617 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trav16d-dv11A0A075B617 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trav16d-dv11A0A075B617 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trav16d-dv11A0A075B617 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trav16d-dv11A0A075B617 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trav16d-dv11A0A075B617 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trav16d-dv11A0A075B617 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trav16d-dv11A0A075B617 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trav16d-dv11A0A075B617 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
Trav16d-dv11A0A075B617 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trav16d-dv11A0A075B617 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav16d-dv11A0A075B617 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Trav16d-dv11A0A075B617 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trav16d-dv11A0A075B617 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trav16d-dv11A0A075B617 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC18.12■□□□□ 0.49
Trav16d-dv11A0A075B617 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trav16d-dv11A0A075B617 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav16d-dv11A0A075B617 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav16d-dv11A0A075B617 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Trav16d-dv11A0A075B617 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav16d-dv11A0A075B617 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Trav16d-dv11A0A075B617 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav16d-dv11A0A075B617 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav16d-dv11A0A075B617 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trav16d-dv11A0A075B617 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC18.09■□□□□ 0.49
Trav16d-dv11A0A075B617 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trav16d-dv11A0A075B617 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Trav16d-dv11A0A075B617 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trav16d-dv11A0A075B617 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC18.09■□□□□ 0.49
Trav16d-dv11A0A075B617 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
Trav16d-dv11A0A075B617 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav16d-dv11A0A075B617 AC153890.1-201ENSMUST00000220021 2469 ntBASIC18.07■□□□□ 0.48
Trav16d-dv11A0A075B617 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC18.07■□□□□ 0.48
Trav16d-dv11A0A075B617 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trav16d-dv11A0A075B617 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trav16d-dv11A0A075B617 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
Trav16d-dv11A0A075B617 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trav16d-dv11A0A075B617 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC18.06■□□□□ 0.48
Trav16d-dv11A0A075B617 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trav16d-dv11A0A075B617 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trav16d-dv11A0A075B617 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Trav16d-dv11A0A075B617 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC18.04■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms