Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Sh3rf1Q69ZI1 Gm5576-201ENSMUST00000075809 1236 ntBASIC19.42■□□□□ 0.7
Sh3rf1Q69ZI1 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Sh3rf1Q69ZI1 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Sh3rf1Q69ZI1 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Sh3rf1Q69ZI1 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sh3rf1Q69ZI1 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sh3rf1Q69ZI1 Gm38342-201ENSMUST00000195710 2980 ntBASIC19.41■□□□□ 0.7
Sh3rf1Q69ZI1 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Sh3rf1Q69ZI1 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sh3rf1Q69ZI1 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sh3rf1Q69ZI1 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
Sh3rf1Q69ZI1 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Sh3rf1Q69ZI1 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sh3rf1Q69ZI1 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sh3rf1Q69ZI1 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Sh3rf1Q69ZI1 Gm20100-201ENSMUST00000209418 2272 ntBASIC19.41■□□□□ 0.7
Sh3rf1Q69ZI1 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sh3rf1Q69ZI1 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Sh3rf1Q69ZI1 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC19.4■□□□□ 0.7
Sh3rf1Q69ZI1 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC19.4■□□□□ 0.7
Sh3rf1Q69ZI1 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Sh3rf1Q69ZI1 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Sh3rf1Q69ZI1 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Sh3rf1Q69ZI1 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Sh3rf1Q69ZI1 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.7
Sh3rf1Q69ZI1 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Sh3rf1Q69ZI1 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Sh3rf1Q69ZI1 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Sh3rf1Q69ZI1 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Sh3rf1Q69ZI1 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Sh3rf1Q69ZI1 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
Sh3rf1Q69ZI1 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC19.39■□□□□ 0.69
Sh3rf1Q69ZI1 Gm5297-201ENSMUST00000198555 1171 ntBASIC19.39■□□□□ 0.69
Sh3rf1Q69ZI1 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Sh3rf1Q69ZI1 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC19.39■□□□□ 0.69
Sh3rf1Q69ZI1 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Sh3rf1Q69ZI1 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Sh3rf1Q69ZI1 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Sh3rf1Q69ZI1 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Sh3rf1Q69ZI1 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Sh3rf1Q69ZI1 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Sh3rf1Q69ZI1 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC19.38■□□□□ 0.69
Sh3rf1Q69ZI1 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Sh3rf1Q69ZI1 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Sh3rf1Q69ZI1 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
Sh3rf1Q69ZI1 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Sh3rf1Q69ZI1 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
Sh3rf1Q69ZI1 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sh3rf1Q69ZI1 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sh3rf1Q69ZI1 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sh3rf1Q69ZI1 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sh3rf1Q69ZI1 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sh3rf1Q69ZI1 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Sh3rf1Q69ZI1 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Sh3rf1Q69ZI1 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sh3rf1Q69ZI1 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sh3rf1Q69ZI1 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Sh3rf1Q69ZI1 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC19.37■□□□□ 0.69
Sh3rf1Q69ZI1 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC19.37■□□□□ 0.69
Sh3rf1Q69ZI1 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC19.37■□□□□ 0.69
Sh3rf1Q69ZI1 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sh3rf1Q69ZI1 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sh3rf1Q69ZI1 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
Sh3rf1Q69ZI1 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Sh3rf1Q69ZI1 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC19.37■□□□□ 0.69
Sh3rf1Q69ZI1 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC19.36■□□□□ 0.69
Sh3rf1Q69ZI1 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Sh3rf1Q69ZI1 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Sh3rf1Q69ZI1 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Sh3rf1Q69ZI1 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Sh3rf1Q69ZI1 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Sh3rf1Q69ZI1 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Sh3rf1Q69ZI1 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Sh3rf1Q69ZI1 Wdr70-203ENSMUST00000227371 1130 ntBASIC19.36■□□□□ 0.69
Sh3rf1Q69ZI1 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Sh3rf1Q69ZI1 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Sh3rf1Q69ZI1 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Sh3rf1Q69ZI1 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Sh3rf1Q69ZI1 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Sh3rf1Q69ZI1 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sh3rf1Q69ZI1 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sh3rf1Q69ZI1 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Sh3rf1Q69ZI1 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sh3rf1Q69ZI1 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sh3rf1Q69ZI1 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sh3rf1Q69ZI1 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sh3rf1Q69ZI1 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC19.35■□□□□ 0.69
Sh3rf1Q69ZI1 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sh3rf1Q69ZI1 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Sh3rf1Q69ZI1 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Sh3rf1Q69ZI1 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Sh3rf1Q69ZI1 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Sh3rf1Q69ZI1 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Sh3rf1Q69ZI1 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Sh3rf1Q69ZI1 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
Sh3rf1Q69ZI1 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Sh3rf1Q69ZI1 Gm12251-201ENSMUST00000117893 792 ntBASIC19.34■□□□□ 0.69
Sh3rf1Q69ZI1 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Sh3rf1Q69ZI1 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 104.5 ms