Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Msh3P13705 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Msh3P13705 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC21.23■□□□□ 0.99
Msh3P13705 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Msh3P13705 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Msh3P13705 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Msh3P13705 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Msh3P13705 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Msh3P13705 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Msh3P13705 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Msh3P13705 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Msh3P13705 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Msh3P13705 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Msh3P13705 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Msh3P13705 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Msh3P13705 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Msh3P13705 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Msh3P13705 AC126028.2-201ENSMUST00000228100 1833 ntBASIC21.22■□□□□ 0.99
Msh3P13705 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Msh3P13705 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Msh3P13705 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Msh3P13705 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Msh3P13705 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Msh3P13705 Gm7860-201ENSMUST00000121190 879 ntBASIC21.21■□□□□ 0.99
Msh3P13705 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC21.21■□□□□ 0.99
Msh3P13705 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
Msh3P13705 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC21.21■□□□□ 0.99
Msh3P13705 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC21.21■□□□□ 0.99
Msh3P13705 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Msh3P13705 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Msh3P13705 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Msh3P13705 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC21.21■□□□□ 0.99
Msh3P13705 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Msh3P13705 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Msh3P13705 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.99
Msh3P13705 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Msh3P13705 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Msh3P13705 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC21.2■□□□□ 0.98
Msh3P13705 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Msh3P13705 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Msh3P13705 Gm5540-201ENSMUST00000131852 1848 ntBASIC21.2■□□□□ 0.98
Msh3P13705 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Msh3P13705 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Msh3P13705 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Msh3P13705 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msh3P13705 Iqck-206ENSMUST00000208658 2891 ntBASIC21.19■□□□□ 0.98
Msh3P13705 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msh3P13705 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msh3P13705 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC21.19■□□□□ 0.98
Msh3P13705 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msh3P13705 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msh3P13705 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msh3P13705 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Msh3P13705 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC21.19■□□□□ 0.98
Msh3P13705 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Msh3P13705 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msh3P13705 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msh3P13705 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msh3P13705 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Msh3P13705 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Msh3P13705 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Msh3P13705 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Msh3P13705 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Msh3P13705 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Msh3P13705 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Msh3P13705 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Msh3P13705 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Msh3P13705 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Msh3P13705 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Msh3P13705 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC21.18■□□□□ 0.98
Msh3P13705 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC21.18■□□□□ 0.98
Msh3P13705 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Msh3P13705 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Msh3P13705 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Msh3P13705 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Msh3P13705 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Msh3P13705 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC21.17■□□□□ 0.98
Msh3P13705 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC21.17■□□□□ 0.98
Msh3P13705 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC21.17■□□□□ 0.98
Msh3P13705 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC21.17■□□□□ 0.98
Msh3P13705 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Msh3P13705 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Msh3P13705 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Msh3P13705 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC21.17■□□□□ 0.98
Msh3P13705 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Msh3P13705 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Msh3P13705 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Msh3P13705 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Msh3P13705 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Msh3P13705 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Msh3P13705 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Msh3P13705 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Msh3P13705 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Msh3P13705 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Msh3P13705 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Msh3P13705 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Msh3P13705 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Msh3P13705 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Msh3P13705 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Msh3P13705 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 118.9 ms