Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trbv1A0A0B4J1G7 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trbv1A0A0B4J1G7 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trbv1A0A0B4J1G7 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Trbv1A0A0B4J1G7 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trbv1A0A0B4J1G7 Gm45606-201ENSMUST00000209836 2795 ntBASIC15.08■□□□□ 0.01
Trbv1A0A0B4J1G7 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC15.08■□□□□ 0.01
Trbv1A0A0B4J1G7 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Trbv1A0A0B4J1G7 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC15.08■□□□□ 0
Trbv1A0A0B4J1G7 Etf1-202ENSMUST00000180351 108 ntBASIC15.08■□□□□ 0
Trbv1A0A0B4J1G7 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trbv1A0A0B4J1G7 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trbv1A0A0B4J1G7 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Trbv1A0A0B4J1G7 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Trbv1A0A0B4J1G7 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trbv1A0A0B4J1G7 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trbv1A0A0B4J1G7 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Trbv1A0A0B4J1G7 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trbv1A0A0B4J1G7 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Trbv1A0A0B4J1G7 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC15.07■□□□□ 0
Trbv1A0A0B4J1G7 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trbv1A0A0B4J1G7 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trbv1A0A0B4J1G7 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trbv1A0A0B4J1G7 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC15.07■□□□□ 0
Trbv1A0A0B4J1G7 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trbv1A0A0B4J1G7 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Trbv1A0A0B4J1G7 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Trbv1A0A0B4J1G7 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trbv1A0A0B4J1G7 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trbv1A0A0B4J1G7 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC15.07■□□□□ 0
Trbv1A0A0B4J1G7 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trbv1A0A0B4J1G7 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Trbv1A0A0B4J1G7 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
Trbv1A0A0B4J1G7 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trbv1A0A0B4J1G7 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Trbv1A0A0B4J1G7 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Trbv1A0A0B4J1G7 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trbv1A0A0B4J1G7 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trbv1A0A0B4J1G7 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trbv1A0A0B4J1G7 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Trbv1A0A0B4J1G7 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trbv1A0A0B4J1G7 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC15.06■□□□□ 0
Trbv1A0A0B4J1G7 AC093043.1-201ENSMUST00000226700 898 ntBASIC15.06■□□□□ 0
Trbv1A0A0B4J1G7 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trbv1A0A0B4J1G7 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trbv1A0A0B4J1G7 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC15.06■□□□□ 0
Trbv1A0A0B4J1G7 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC15.06■□□□□ 0
Trbv1A0A0B4J1G7 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Trbv1A0A0B4J1G7 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC15.06■□□□□ 0
Trbv1A0A0B4J1G7 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trbv1A0A0B4J1G7 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Trbv1A0A0B4J1G7 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC15.05■□□□□ 0
Trbv1A0A0B4J1G7 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC15.05■□□□□ 0
Trbv1A0A0B4J1G7 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC15.05■□□□□ 0
Trbv1A0A0B4J1G7 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Trbv1A0A0B4J1G7 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC15.05■□□□□ 0
Trbv1A0A0B4J1G7 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
Trbv1A0A0B4J1G7 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
Trbv1A0A0B4J1G7 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC15.05■□□□□ -0
Trbv1A0A0B4J1G7 Rps24-207ENSMUST00000224568 714 ntBASIC15.05■□□□□ -0
Trbv1A0A0B4J1G7 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC15.05■□□□□ -0
Trbv1A0A0B4J1G7 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC15.05■□□□□ -0
Trbv1A0A0B4J1G7 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC15.05■□□□□ -0
Trbv1A0A0B4J1G7 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trbv1A0A0B4J1G7 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trbv1A0A0B4J1G7 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trbv1A0A0B4J1G7 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC15.05■□□□□ -0
Trbv1A0A0B4J1G7 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Trbv1A0A0B4J1G7 Gm45141-201ENSMUST00000206502 1888 ntBASIC15.05■□□□□ -0
Trbv1A0A0B4J1G7 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC15.05■□□□□ -0
Trbv1A0A0B4J1G7 Gm19439-201ENSMUST00000198195 2273 ntBASIC15.05■□□□□ -0
Trbv1A0A0B4J1G7 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC15.05■□□□□ -0
Trbv1A0A0B4J1G7 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC15.05■□□□□ -0
Trbv1A0A0B4J1G7 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trbv1A0A0B4J1G7 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC15.05■□□□□ -0
Trbv1A0A0B4J1G7 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trbv1A0A0B4J1G7 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Trbv1A0A0B4J1G7 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trbv1A0A0B4J1G7 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trbv1A0A0B4J1G7 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trbv1A0A0B4J1G7 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC15.04■□□□□ -0
Trbv1A0A0B4J1G7 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trbv1A0A0B4J1G7 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trbv1A0A0B4J1G7 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trbv1A0A0B4J1G7 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC15.04■□□□□ -0
Trbv1A0A0B4J1G7 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trbv1A0A0B4J1G7 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trbv1A0A0B4J1G7 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Trbv1A0A0B4J1G7 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trbv1A0A0B4J1G7 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trbv1A0A0B4J1G7 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Trbv1A0A0B4J1G7 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trbv1A0A0B4J1G7 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC15.03■□□□□ -0
Trbv1A0A0B4J1G7 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC15.03■□□□□ -0
Trbv1A0A0B4J1G7 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trbv1A0A0B4J1G7 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trbv1A0A0B4J1G7 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC15.03■□□□□ -0
Trbv1A0A0B4J1G7 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC15.03■□□□□ -0
Trbv1A0A0B4J1G7 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trbv1A0A0B4J1G7 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC15.03■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 61.8 ms