Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Vps28Q9D1C8 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Vps28Q9D1C8 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Vps28Q9D1C8 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Vps28Q9D1C8 Gm5874-201ENSMUST00000096101 508 ntBASIC19.84■□□□□ 0.77
Vps28Q9D1C8 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Vps28Q9D1C8 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Vps28Q9D1C8 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Vps28Q9D1C8 Gm43909-201ENSMUST00000203443 1876 ntBASIC19.84■□□□□ 0.77
Vps28Q9D1C8 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Vps28Q9D1C8 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Vps28Q9D1C8 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Vps28Q9D1C8 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
Vps28Q9D1C8 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC19.83■□□□□ 0.77
Vps28Q9D1C8 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC19.83■□□□□ 0.77
Vps28Q9D1C8 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC19.83■□□□□ 0.77
Vps28Q9D1C8 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Vps28Q9D1C8 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
Vps28Q9D1C8 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Vps28Q9D1C8 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Vps28Q9D1C8 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Vps28Q9D1C8 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Vps28Q9D1C8 AA386476-201ENSMUST00000098781 1665 ntBASIC19.82■□□□□ 0.76
Vps28Q9D1C8 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
Vps28Q9D1C8 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Vps28Q9D1C8 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Vps28Q9D1C8 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Vps28Q9D1C8 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Vps28Q9D1C8 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Vps28Q9D1C8 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Vps28Q9D1C8 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Vps28Q9D1C8 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Vps28Q9D1C8 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Vps28Q9D1C8 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Vps28Q9D1C8 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Vps28Q9D1C8 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Vps28Q9D1C8 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Vps28Q9D1C8 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Vps28Q9D1C8 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Vps28Q9D1C8 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Vps28Q9D1C8 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Vps28Q9D1C8 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Vps28Q9D1C8 Gm10493-201ENSMUST00000097270 612 ntBASIC19.8■□□□□ 0.76
Vps28Q9D1C8 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Vps28Q9D1C8 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Vps28Q9D1C8 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Vps28Q9D1C8 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Vps28Q9D1C8 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Vps28Q9D1C8 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Vps28Q9D1C8 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Vps28Q9D1C8 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Vps28Q9D1C8 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC19.79■□□□□ 0.76
Vps28Q9D1C8 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC19.79■□□□□ 0.76
Vps28Q9D1C8 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Vps28Q9D1C8 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Vps28Q9D1C8 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Vps28Q9D1C8 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Vps28Q9D1C8 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Vps28Q9D1C8 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Vps28Q9D1C8 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
Vps28Q9D1C8 Gm42911-201ENSMUST00000199360 1630 ntBASIC19.78■□□□□ 0.76
Vps28Q9D1C8 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC19.78■□□□□ 0.76
Vps28Q9D1C8 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC19.78■□□□□ 0.76
Vps28Q9D1C8 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Vps28Q9D1C8 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC19.78■□□□□ 0.76
Vps28Q9D1C8 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
Vps28Q9D1C8 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Vps28Q9D1C8 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Vps28Q9D1C8 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
Vps28Q9D1C8 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Vps28Q9D1C8 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Vps28Q9D1C8 Gm6802-201ENSMUST00000167843 1983 ntBASIC19.77■□□□□ 0.76
Vps28Q9D1C8 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Vps28Q9D1C8 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Vps28Q9D1C8 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Vps28Q9D1C8 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Vps28Q9D1C8 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Vps28Q9D1C8 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Vps28Q9D1C8 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Vps28Q9D1C8 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Vps28Q9D1C8 Gm27801-201ENSMUST00000184174 223 ntBASIC19.77■□□□□ 0.76
Vps28Q9D1C8 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC19.77■□□□□ 0.76
Vps28Q9D1C8 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Vps28Q9D1C8 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Vps28Q9D1C8 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Vps28Q9D1C8 Gm10129-202ENSMUST00000193100 1316 ntBASIC19.76■□□□□ 0.75
Vps28Q9D1C8 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Vps28Q9D1C8 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Vps28Q9D1C8 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Vps28Q9D1C8 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Vps28Q9D1C8 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Vps28Q9D1C8 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC19.76■□□□□ 0.75
Vps28Q9D1C8 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Vps28Q9D1C8 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC19.76■□□□□ 0.75
Vps28Q9D1C8 AC099934.2-201ENSMUST00000196389 70 ntBASIC19.76■□□□□ 0.75
Vps28Q9D1C8 AC156953.1-201ENSMUST00000196953 70 ntBASIC19.76■□□□□ 0.75
Vps28Q9D1C8 AC157822.2-201ENSMUST00000200291 70 ntBASIC19.76■□□□□ 0.75
Vps28Q9D1C8 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Vps28Q9D1C8 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Vps28Q9D1C8 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms