Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Gm43017-201ENSMUST00000198296 752 ntBASIC21.39■■□□□ 1.01
Msh3P13705 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Msh3P13705 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Msh3P13705 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Msh3P13705 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Msh3P13705 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Msh3P13705 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Msh3P13705 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
Msh3P13705 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC21.38■■□□□ 1.01
Msh3P13705 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Msh3P13705 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC21.38■■□□□ 1.01
Msh3P13705 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Msh3P13705 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Msh3P13705 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Msh3P13705 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Msh3P13705 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
Msh3P13705 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
Msh3P13705 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Msh3P13705 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Msh3P13705 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Msh3P13705 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Msh3P13705 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Msh3P13705 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Msh3P13705 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Msh3P13705 CT030146.1-201ENSMUST00000220919 217 ntBASIC21.37■■□□□ 1.01
Msh3P13705 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Msh3P13705 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Msh3P13705 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Msh3P13705 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Msh3P13705 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Msh3P13705 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
Msh3P13705 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Msh3P13705 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Msh3P13705 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Msh3P13705 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Msh3P13705 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Msh3P13705 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Msh3P13705 Gm26833-201ENSMUST00000180899 440 ntBASIC21.36■■□□□ 1.01
Msh3P13705 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC21.36■■□□□ 1.01
Msh3P13705 Gm27801-201ENSMUST00000184174 223 ntBASIC21.36■■□□□ 1.01
Msh3P13705 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Msh3P13705 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Msh3P13705 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC21.36■■□□□ 1.01
Msh3P13705 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC21.35■■□□□ 1.01
Msh3P13705 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC21.35■■□□□ 1.01
Msh3P13705 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Msh3P13705 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC21.35■■□□□ 1.01
Msh3P13705 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Msh3P13705 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Msh3P13705 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Msh3P13705 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Msh3P13705 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Msh3P13705 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC21.34■■□□□ 1.01
Msh3P13705 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Msh3P13705 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Msh3P13705 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
Msh3P13705 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Msh3P13705 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Msh3P13705 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Msh3P13705 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Msh3P13705 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Msh3P13705 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Msh3P13705 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Msh3P13705 Gm2011-201ENSMUST00000203124 1263 ntBASIC21.33■■□□□ 1.01
Msh3P13705 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC21.33■■□□□ 1.01
Msh3P13705 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Msh3P13705 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Msh3P13705 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Msh3P13705 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
Msh3P13705 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
Msh3P13705 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
Msh3P13705 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC21.32■■□□□ 1
Msh3P13705 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
Msh3P13705 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Msh3P13705 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC21.32■■□□□ 1
Msh3P13705 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC21.32■■□□□ 1
Msh3P13705 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC21.32■■□□□ 1
Msh3P13705 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Msh3P13705 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Msh3P13705 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Msh3P13705 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Msh3P13705 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Msh3P13705 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Msh3P13705 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Msh3P13705 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Msh3P13705 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Msh3P13705 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Msh3P13705 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
Msh3P13705 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Msh3P13705 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC21.31■■□□□ 1
Msh3P13705 Cdc34b-202ENSMUST00000188741 1252 ntBASIC21.31■■□□□ 1
Msh3P13705 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Msh3P13705 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC21.31■■□□□ 1
Msh3P13705 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Msh3P13705 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC21.31■■□□□ 1
Msh3P13705 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Msh3P13705 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Msh3P13705 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC21.31■■□□□ 1
Msh3P13705 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Msh3P13705 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 75.8 ms