Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trbv1A0A0B4J1G7 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trbv1A0A0B4J1G7 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trbv1A0A0B4J1G7 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trbv1A0A0B4J1G7 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trbv1A0A0B4J1G7 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC15.15■□□□□ 0.02
Trbv1A0A0B4J1G7 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trbv1A0A0B4J1G7 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Trbv1A0A0B4J1G7 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv1A0A0B4J1G7 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv1A0A0B4J1G7 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv1A0A0B4J1G7 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv1A0A0B4J1G7 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv1A0A0B4J1G7 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC15.14■□□□□ 0.01
Trbv1A0A0B4J1G7 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC15.14■□□□□ 0.01
Trbv1A0A0B4J1G7 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv1A0A0B4J1G7 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Trbv1A0A0B4J1G7 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Trbv1A0A0B4J1G7 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv1A0A0B4J1G7 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv1A0A0B4J1G7 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv1A0A0B4J1G7 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv1A0A0B4J1G7 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv1A0A0B4J1G7 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv1A0A0B4J1G7 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv1A0A0B4J1G7 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC15.13■□□□□ 0.01
Trbv1A0A0B4J1G7 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv1A0A0B4J1G7 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Trbv1A0A0B4J1G7 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC15.13■□□□□ 0.01
Trbv1A0A0B4J1G7 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv1A0A0B4J1G7 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC15.13■□□□□ 0.01
Trbv1A0A0B4J1G7 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv1A0A0B4J1G7 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv1A0A0B4J1G7 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv1A0A0B4J1G7 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv1A0A0B4J1G7 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv1A0A0B4J1G7 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv1A0A0B4J1G7 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv1A0A0B4J1G7 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv1A0A0B4J1G7 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv1A0A0B4J1G7 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv1A0A0B4J1G7 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Trbv1A0A0B4J1G7 Grk6-206ENSMUST00000224995 2971 ntBASIC15.12■□□□□ 0.01
Trbv1A0A0B4J1G7 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv1A0A0B4J1G7 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv1A0A0B4J1G7 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv1A0A0B4J1G7 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv1A0A0B4J1G7 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv1A0A0B4J1G7 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv1A0A0B4J1G7 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv1A0A0B4J1G7 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Trbv1A0A0B4J1G7 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv1A0A0B4J1G7 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv1A0A0B4J1G7 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 Gm6627-201ENSMUST00000218299 2386 ntBASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 Gm7417-201ENSMUST00000192950 473 ntBASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trbv1A0A0B4J1G7 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trbv1A0A0B4J1G7 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trbv1A0A0B4J1G7 Gm44832-201ENSMUST00000208849 2303 ntBASIC15.1■□□□□ 0.01
Trbv1A0A0B4J1G7 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trbv1A0A0B4J1G7 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC15.1■□□□□ 0.01
Trbv1A0A0B4J1G7 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC15.1■□□□□ 0.01
Trbv1A0A0B4J1G7 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trbv1A0A0B4J1G7 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trbv1A0A0B4J1G7 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC15.1■□□□□ 0.01
Trbv1A0A0B4J1G7 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trbv1A0A0B4J1G7 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trbv1A0A0B4J1G7 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC15.1■□□□□ 0.01
Trbv1A0A0B4J1G7 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trbv1A0A0B4J1G7 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trbv1A0A0B4J1G7 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trbv1A0A0B4J1G7 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trbv1A0A0B4J1G7 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trbv1A0A0B4J1G7 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trbv1A0A0B4J1G7 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trbv1A0A0B4J1G7 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trbv1A0A0B4J1G7 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trbv1A0A0B4J1G7 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Trbv1A0A0B4J1G7 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms